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xjtu-omics / SVision

Detecting genome structural variants with deep learning in single molecule sequencing
GNU General Public License v3.0
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Run SVision on a pseudo-chromosome #31

Open vegetableyu opened 8 months ago

vegetableyu commented 8 months ago

Hi there, I am focusing on a specific region of the genome, so I extracted this region from the .fa file as a pseudo chromosome and got the alignment results (bam file). If I run SVision on this bam file, will I get accurate results? (Is the result of SVision affected by the chromosome?) Best wishes. Yu

jiadong324 commented 8 months ago

Hi,

Just create a reference file with your fasta and made a index with samtools faidx. Use your customized fasta file as a reference for SVision.