xuebingwu
commented
1 year ago I actually replaced T with U in adobe illustrator afterwards. You can try setting “sequence type” to “other” and enter “ACGUX” as the alphabet.
Best, Xuebing
-- Xuebing Wu, Ph.D. Assistant Professor Columbia University Irving Medical Center Department of Medicine
- Cardiology Division
- Cardiometabolic Genomics Program Department of Systems Biology Herbert Irving Comprehensive Cancer Center Data Science Institute 630 West 168th Street, P&S 10-401, New York, NY 10032 Office: 212-304-7615 Lab: 212-305-2366 https://xuebingwu.github.io/
From: ReaganGen @.> Date: Wednesday, March 8, 2023 at 4:59 PM To: xuebingwu/kpLogo @.> Cc: Subscribed @.***> Subject: [EXTERNAL] [xuebingwu/kpLogo] Question about alphabet (Issue #5)
Thank you for your work on kpLogo. Here is the question. Though you mentioned that there is no need for users to specify the ACGU alphabet (RNA would be converted to DNA automatically) , but I want to make sure that is there any chance that I can use ACGU as alphabet to plot the probability logo like shown in your article (figure below)? Thanks a lot.
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Thank you for your work on kpLogo. Here is the question. Though you mentioned that there is no need for users to specify the ACGU alphabet (RNA would be converted to DNA automatically) , but I want to make sure that is there any chance that I can use ACGU as alphabet to plot the probability logo like shown in your article (figure below)? Thanks a lot.