MHC-I genotyping on Split BAMs

ylab-hi / ScanNeo2

Snakemake-based computational workflow for neoantigen prediction from diverse sources

MIT License

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MHC-I genotyping on Split BAMs #4

Open riasc opened 5 months ago

riasc commented 5 months ago

BAMfiles probably need to be QNAME sorted (rather than coordinate sorted) when splitting them

riasc commented 1 week ago

WARNING 2024-06-20 22:56:20 SplitSamByNumberOfReads Splitting a coordinate sorted bam may result in invalid bams that do not always contain each read's mate in the same bam.