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yu-lab-vt / AQuA2

Activity Quantification and Analysis for molecular spatiotemporal signals
GNU General Public License v2.0
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CFU in batch mode #4

Closed Sihao closed 6 months ago

Sihao commented 6 months ago

Is it possible to include the CFUs in the output from the batch mode script? Alternatively, is it possible to use the GUI for the CFU operations using the output from the events saved through the batch script?

Thanks

XuelongMi commented 6 months ago

Hi Sihao,

"post_cfu_cmd_batch.m" is added so that it can detect CFU based on events saved through the batch script. (To use this script, some files are updated, so maybe you should download the new version from GitHub)

Besides, by typing "aqua_gui(res)" in the MATLAB Command Window after loading the saved file obtained from batch script, you can open GUI and load the events detected. Then you can do the CFU operations on that GUI by clicking "CFU detect".

Best Wishes, Xuelong Mi

XuelongMi commented 6 months ago

Could I close this comment?

Sihao commented 6 months ago

Thank you for the additional script. Actually it seems like my problem is that my output files are very large (25GB) and Matlab is struggling to load the .mat file which contains the res variable