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yukiteruono / pbsim3

PBSIM3: a simulator for all types of PacBio and ONT long reads
GNU General Public License v2.0
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line 8: 341073 Segmentation fault #28

Closed tanger-code closed 1 month ago

tanger-code commented 1 month ago

Hi.

I'm simulating the long reads using command: pbsim --strategy wgs --method qshmm --qshmm /data/home/tangen/data/sim_small_variant/model/QSHMM-RSII.model --depth 5 --genome /data/home/tangen/data/sim_small_variant/GCA_chr21.fa --prefix long_depth_5/sd

But there is an error: image

The pbsim version I used is v3.0.2, and v3.0.4 is the same.

yukiteruono commented 1 month ago

Thank you for using PBSIM3. The cause cannot be determined from the error message. Is "long_depth_5" pre-created? (PBSIM3 does not create directories) Is the input files path correct? .

tanger-code commented 1 month ago

Sorry, there is an error when I copy the model file. It works now. Thank you!