search

yupenghe / methylpy

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
Apache License 2.0
137 stars 47 forks source link

methylpy 1.4.7 #90

Open liyangyang12 opened 6 months ago

liyangyang12 commented 6 months ago

Dear yupenghe, Is there any change in methylpy 1.4.7 compared to 1.4.6? 1.4.7 generates a lot of files such as dmr_filteredallc*-DNA.tsv_5_36.tsv in the folder when I run DMRfind, and dmr_rms_results_collapsed.tsv and dmr_rms_results.tsv.gz only have headers, not DMR regions. This problem was not encountered with 1.4.6, but it seems that conda can't install 1.4.6 at the moment! Thanks.

yupenghe commented 6 months ago

Weird. Would 

conda install -y -c bioconda -c conda-forge methylpy=1.4.6

work?

yupenghe commented 6 months ago

If not, try

pip install --upgrade methylpy=1.4.6
liyangyang12 commented 6 months ago

Thank you very much! 1.4.6 was not applied by conda. Methylpy 1.4.3 works.