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zanglab
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SICER2
MIT License
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How do I use call peak with samples with duplicates?
#30
anyang-kevin
opened
4 months ago
0
bedtools bam2bed race condition
#29
skchronicles
opened
4 months ago
1
Keeping low number of PCR duplicates
#28
phoebe460
opened
5 months ago
0
Error with --significant_reads
#27
anyang-kevin
closed
1 month ago
1
SICER2 program run error
#26
dkur0006
closed
2 months ago
1
Fixes zanglab/SICER2#24: Resolves ValueError caused by BED files with…
#25
skchronicles
closed
6 months ago
0
Error due to score numpy dtype
#24
skchronicles
closed
6 months ago
3
Why are species and their chromosomes hardcoded ?
#23
vidal-adrien
opened
11 months ago
3
Release tag for v1.0.3
#22
apregier
opened
1 year ago
0
ValueError: math domain error
#21
MingLi-929
opened
1 year ago
0
TypeError: can only concatenate str (not "numpy.int32") to str
#20
jaudall
opened
1 year ago
0
How to change the `treatment_file-W200-G600-islands-summary` file to the standard `bed` file format?
#19
danli349
opened
1 year ago
1
IndexError while "Determining the score threshold from random background..."
#18
arhickman
opened
2 years ago
3
grep chrom name in the first BED column only
#17
darked89
opened
2 years ago
0
suggestion to raise a warning for genome assembly version difference UCSC/ENSEMBL
#16
FatihSarigol
opened
2 years ago
0
Custom genome adding
#15
El-Castor
closed
2 years ago
1
Species info for custom genome.
#14
crowja
opened
2 years ago
4
Bug when names of input treatment and control files are the same
#13
AlexandreLaverre
closed
6 months ago
1
how to identify differential peaks between cell lines
#12
pastaxingxin
opened
2 years ago
0
Writing to /tmp on HPC Clusters
#11
rpep
closed
6 months ago
2
Not working when chromosome is not starting with "chr"
#10
PFRoux
opened
3 years ago
2
Fix bug with printing messages.
#9
jinyongyoo
closed
3 years ago
0
New Species -s/--species
#7
Reig-Valiente
closed
3 years ago
2
fixed bugs reported
#6
jinyongyoo
closed
4 years ago
0
conda recipe
#5
mjsteinbaugh
closed
4 years ago
2
Write error when specifying output directory
#4
desireetillo
opened
4 years ago
0
SICER2 can't run~
#3
freedog8
closed
4 years ago
2
paired-end?
#2
freedog8
opened
4 years ago
0
Running SICER2 with biological replicate
#1
cell101
closed
4 years ago
5