I have 10x visium ST (multiple samples) and have used cell2location to obtain cell abundance per spots using single cell data.
Next, I am interested in exploring the possibilities of utilizing cell level information along with spatial data for analyzing cell-cell communication. It would be great if you can guide how to use cell labels as an input in COMMOT method ?
Very interesting tool !!!
I have 10x visium ST (multiple samples) and have used cell2location to obtain cell abundance per spots using single cell data. Next, I am interested in exploring the possibilities of utilizing cell level information along with spatial data for analyzing cell-cell communication. It would be great if you can guide how to use cell labels as an input in COMMOT method ?
I would appreciate all the suggestions!!