Hello Xiaofei,
I would like to ask if after a P utg assembly with HapHiC would it be possible to extract the mapped hic reads selectively for Hap1 and Hap2?
For future downstream applications ? maybe from the clusters of HapHiC or the groups? I am not specialist but do you know any way or how we could achieve that ? ( To extract all reads mapped to a group in HapHiC from the initial HiC_filtered.bam )
Hello Xiaofei, I would like to ask if after a P utg assembly with HapHiC would it be possible to extract the mapped hic reads selectively for Hap1 and Hap2?
For future downstream applications ? maybe from the clusters of HapHiC or the groups? I am not specialist but do you know any way or how we could achieve that ? ( To extract all reads mapped to a group in HapHiC from the initial HiC_filtered.bam )
Thank you in advance. Quentin.