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zhangrengang
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TEsorter
TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
https://doi.org/10.1093/hr/uhac017
GNU General Public License v3.0
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TypeError
#55
EdgarLW
opened
1 day ago
1
Exploring the transposition profile of specific LTRs
#54
shuren7
opened
2 months ago
1
get_full_seqs in LTR_retriever.py generate some empty sequences which should be generated.
#53
LeeYEAH2
closed
3 months ago
4
How to merge the TEsorter repeat libraires
#52
manoharbisht1998
opened
5 months ago
18
Allocation into lineages for metazoan LTR-RTs
#51
alexandrosbousios
opened
11 months ago
4
TEsorter genome.fasta -genome -p 20 -prob 0.9
#50
JianjiaDTU
opened
1 year ago
1
How to obtain the set of distances between LTRs and their adjacent genes?
#49
Wenwen012345
closed
1 year ago
3
Assistance with custom installation directory
#48
JKing2000
opened
1 year ago
5
Can TEsorter classify Class II elements(DNA transposons) into clade-level?
#47
2eYu
opened
1 year ago
2
Crash when special characters occurred in sequence IDs
#46
oushujun
closed
1 year ago
3
Insertion time calculation
#45
tinyfallen
closed
1 year ago
4
How to identify the homology (synteny) of LTRs?
#44
Wenwen012345
closed
1 year ago
10
Problem with concatenate_domains.py
#43
yliasolom
opened
1 year ago
1
ModuleNotFoundError: No module named 'RunCmdsMP'
#42
2eYu
closed
1 year ago
5
How to analyze the effect of transposons on plant traits in de novo transcriptome assembly.
#41
Wenwen012345
closed
1 year ago
4
ValueError: invalid literal for int() with base 10: '0.5'
#40
LeeYEAH2
closed
1 year ago
8
Hi~ TEsorter can be worked in animal genoem ?
#39
zuodabin
opened
1 year ago
2
keyError
#38
ttbond
closed
1 year ago
5
Does TEsorter results only contain positive strain?
#37
LeeYEAH2
closed
1 year ago
5
error to get phylogeny tree using LTR_tree.R script
#36
Ravindra-Raut
closed
1 year ago
9
error
#35
123123456abc
closed
1 year ago
3
How to extract the CDS sequences of all LTRs?
#34
Wenwen012345
closed
1 year ago
7
autonomous elements for TIR
#33
gorliver
closed
1 year ago
1
How to obtain the nucleic acid sequence of RT-Domain
#32
Wenwen012345
closed
1 year ago
9
error exit
#31
Jianz9293
closed
1 year ago
11
Target sequence length > 100K
#30
yongzhiyang2012
closed
1 year ago
4
Add SINE hmms
#29
oushujun
closed
2 years ago
13
Can REXdb_v3_TIR.hmm be downloaded?
#28
andreaswallberg
closed
2 years ago
1
Question
#27
ohan-Bioinfo
closed
2 years ago
1
What kind of transposon does the mixture belong to
#26
C-grapes
closed
1 year ago
7
Can't find executable after old school installation
#25
oushujun
closed
3 years ago
2
WARNING: Could not find drmaa library.
#24
C-grapes
closed
2 years ago
1
RuntimeError: Communication pipe read error
#23
zouxq97
closed
2 years ago
1
File exists error
#22
oushujun
closed
3 years ago
1
CI - test by comparing results before each push/merge into master
#21
Juke34
closed
3 years ago
0
Update to python3. Packaged to easy install, easy test, upate readme.
#20
Juke34
closed
3 years ago
0
Try to add actions properly - WIP - Do not merge
#19
Juke34
closed
3 years ago
0
Error when thread # is more than input sequence #
#18
oushujun
closed
3 years ago
2
Setup GitHub actions for Continuous integration (CI)
#17
Juke34
closed
3 years ago
4
Edge-case crash when parsing gff3
#16
philippbayer
closed
3 years ago
2
DNA type transposons cannot be classified?
#15
hechuweiran
closed
3 years ago
1
Python3 version error
#14
OluchiAroh
closed
3 years ago
8
GYDB database classification
#13
OluchiAroh
closed
3 years ago
16
Conda version available
#12
oushujun
closed
3 years ago
2
license
#11
Juke34
closed
4 years ago
1
python3
#10
Juke34
closed
4 years ago
11
The subfamilies found by TEsorter
#9
YTLogos
closed
4 years ago
4
RepeatMasker.py
#8
Ssmile333
closed
4 years ago
1
TEsorter find TE-related gene in BUSCO datasets
#7
baozg
closed
4 years ago
1
Can not find SINEs
#6
SC-Duan
closed
4 years ago
3
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