Open manburst opened 1 year ago
seqVCF2GDS("your_vcf_file.vcf.gz", "your_output.gds")
The SNPRelate could read the SeqArray GDS file directly, without converting to SNP GDS.
Thank you for quick reply.
And how do I save or export the output file from R environment to local PC?
Thanks JK.
Dear Sir Now I am learning to use SeqArray package. I am trying to use the package to convert my Exome VCF SNP file into SNPGDS file for SNPrelate package for analysis relatedness. I use
seqVCF2GDS(gdsfile, "gds")
andseqSNP2GDS(gdsfile, "gds")
to convert VCF into GDS then SNP GDS Or convert them back from SNP GDS to VCF file. but how do I save the conveted file? (VCF, GDS and SNP GDS)Thanks in advance JK.