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zhqingit / giremi

GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
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Segmentation fault (core dumped) #13

Open chengeng opened 8 years ago

chengeng commented 8 years ago

Hi Qing,

When I run giremi, I got the following error: Segmentation fault (core dumped)

If I reduce the number of SNVs to < 1,000, it did not output such error. But if the number of SNVs is greater than 1,000, it will give the above error. Could you tell me how to fix this? Moreover, I also did not get the column of IfRNAE in the results. Thank you very much!

All the best,

Geng

zhqingit commented 8 years ago

Hi Geng,

Could you send me your SNV list for test?

Best, Qing

2016-04-12 8:16 GMT-07:00 chengeng notifications@github.com:

Hi Qing,

When I run giremi, I got the following error: Segmentation fault (core dumped)

If I reduce the number of SNVs to < 1,000, it did not output such error. But if the number of SNVs is greater than 1,000, it will give the above error. Could you tell me how to fix this? Moreover, I also did not get the column of IfRNAE in the results. Thank you very much!

All the best,

Geng

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chengeng commented 8 years ago

Hi Qing,

Please see the attachment, thank you!

All the best,

Geng Test_giremi_input.txt

zhqingit commented 8 years ago

Hi Geng,

Sorry for the delay reply. I have checked your input file. It looks the format of some rows is not correct, such as chr10:79541157.

Best, Qing

2016-04-12 9:03 GMT-07:00 chengeng notifications@github.com:

Hi Qing,

Please see the attachment, thank you!

All the best,

Geng Test_giremi_input.txt https://github.com/zhqingit/giremi/files/215392/Test_giremi_input.txt

— You are receiving this because you commented. Reply to this email directly or view it on GitHub https://github.com/zhqingit/giremi/issues/13#issuecomment-208982134

chengeng commented 8 years ago

Hi Qing,

Thank you for pointing it out!

All the best,

Geng