search

zwdzwd / sesame

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
Other
63 stars 33 forks source link

sesameDataCache() ERROR: ExperimentHub Caching fails #137

Open hicihee opened 10 months ago

hicihee commented 10 months ago

When running sesameDataCache() , the following error continues to occur. Although the ExperimentHub's cache file exists in the correct location, an error continues to occur. I don't know what's wrong.

sesame_checkVersion() SeSAMe requires matched versions of R, sesame, sesameData and ExperimentHub. Here is the current versions installed: R: 4.3.2 Bioconductor: 3.18 sesame: 1.20.0 sesameData: 1.20.0 ExperimentHub: 2.10.0

sesameDataCache() Metadata (N=91):

ExperimentHub Caching fails: error in evaluating the argument 'x' in selecting a method for function 'query': Invalid Cache: sqlite file Hub has not been added to cache Run again with 'localHub=FALSE'

ExperimentHub(localHub = FALSE) Cannot connect to ExperimentHub server, using 'localHub=TRUE' instead Using 'localHub=TRUE' If offline, please also see BiocManager vignette section on offline use .updateHubDB(hub_bfc, .class, url, proxy, localHub): Invalid Cache: sqlite file Hub has not been added to cache Run again with 'localHub=FALSE'

tools::R_user_dir("ExperimentHub", which="cache") [1] "C:\Users\Admin\AppData\Local/R/cache/R/ExperimentHub"

zwdzwd commented 10 months ago

Not sure if this is related to proxy/firewall as described in https://support.bioconductor.org/p/132864/. Have you tried setExperimentHubOption as described in that post before sesameDataCache?