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🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
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Custom human methylation array #148

Open demis001 opened 9 months ago

demis001 commented 9 months ago

I am working on a package to analyze a custom array. I read the .idat using sesame and generated a list object with the following data.frames:

> names(iscan)
[1] "probe_beta_df" "probe_pval_df" "platform"      "manifest"

Could you please guide me on converting this list object to some other standard format that will work, for example, with sesame::sesameQC()? I also want to infer the gender from the raw "*.idat" as one of the QC matrices before implementing downstream analysis.

@demis001