Extracting Cluster Data from 2 Way RM ANOVA

[jlit29]

Hi Todd,

I wish to extract the specific X axis coordinates where my 2 way RM anova SPM analysis found statistical significance. I used the following code to print the inference output: FF = spm1d.stats.anova2rm(Y, A, B, SUBJ) FFi = [F.inference(alpha=0.05) for F in FF] print(FFi) When I try to run print(FFi.clusters) I get an error. When I run: print(FFi.clusters for F in FF) I get "generator object at ....". I tried to convert the object to a string, list, and tuple but this didn't work either. Please let me know how I can access the cluster outputs. Thank you for your time.

[0todd0000]

As a quick answer, try:

print( FFi[0].clusters )

or:

for Fi in FFi:
    print( Fi.clusters )

Notes:

• Clusters are only calculated at the inference stage, so you must access clusters from the inference outputs (i.e., from FFi and not from FF)
• Since clusters are specific to a particular F curve, you need to first access a single F curve (e.g. FFi[0]), then you can access its clusters