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0xTCG / biser

A fast tool for detecting and decomposing segmental duplications in genome assemblies
MIT License
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BISER failed: #14

Closed cicerocarlos-ufal closed 2 years ago

cicerocarlos-ufal commented 2 years ago

[o] [e] Masking took 0.00525041s [e] ValueError: invalid base '\r' at position 1002696 of sequence [e] [e] Raised from: std.bio.fasta.FASTAReader._check [e] /home/vagrant/.seq/lib/seq/stdlib/bio/fasta.seq:67:13

Whats's problem?

inumanag commented 2 years ago

Hi @cicerocarlos-ufal

Seems you have a FASTA with the Windows line endings. Can you try using dos2unix on FASTA before passing it to BISER and seeing if it works?

inumanag commented 2 years ago

Closing due to inactivity: please reopen if you encounter this again.