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0xTCG / biser

A fast tool for detecting and decomposing segmental duplications in genome assemblies
MIT License
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biser failed -6 #25

Closed jix2010 closed 1 year ago

jix2010 commented 1 year ago

Thank you for sharing this great tool for detecting SDs. I successfully finished hard-masking, putative SD detection, putative SD alignment and SD decomposition, but then got an error saying Biser failed (-6) ESC[1mI0Error: ESC[0mfile /myfilelocation/SD/ could not be opened

I'm pretty sure that the above directory exists. Could you please help me debug this? Thank you!

inumanag commented 1 year ago

Hi @jix2010

Can you please share the command with me and the full output?

WK-yjf commented 1 year ago

您好 我在运行 biser -o /data/LiY/disk/YJF/SDs_output/ -t 6 --gc 10g /data/LiY/disk/YJF/data/horse_genome.fna 时遇到问题 1685430872755 请问一下这个该如何解决？

inumanag commented 1 year ago

Hi @WK-yjf,

You need to remove / at the end of output (i.e., it should be -o /data/LiY/disk/YJF/SDs_output and not /data/LiY/disk/YJF/SDs_output/). BISER outputs a file, not a directory.