How to filter the output BEDPE file?

0xTCG / biser

A fast tool for detecting and decomposing segmental duplications in genome assemblies

MIT License

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How to filter the output BEDPE file? #34

Closed tiramisutes closed 8 months ago

tiramisutes commented 11 months ago

I run biser to identify SD using soft-hard genome and think the results are too high. But I don't know how to filter out my result data.

inumanag commented 8 months ago

Hi @tiramisutes

That really depends on your use-case; there is no general script for this as all of them are application-specific. However, if you are getting too many results, try soft-masking your genome with RepeatMasker.