Open IvanWoo22 opened 4 months ago
Hi there, thanks for providing this excellent tool.
I have some questions about the biser output results.
biser
There are some SD mates with very close genome distances. Does biser have a standard to distinguish SD from tandem duplication?
I saw mates with overlapping positions in the results. Could you explain this result? Or should I filter these out of the final results?
Chr1 22228526 22242282 Chr1 22237834 22247458 TAIR10_rmmasked:TAIR10_rmmasked 70.3 + + 11687 15594 66M2D154M1I22M3I46M4D81M6D119M13I28N60M82D9M108D33N132D23M8I71M4I80M11I23M27S8M8D21M1I30M9D18M1D17M1I29M2D736M3I568M6D28M1D15M4I50M3I52M8I21M23D25M4I19M1D23M2I35M1667S6M28I37M7D46M29S8M18D2M99I22S3784I135S756I128S519I28S259I33S348I11M16I18M12I18M1I29M1I16M2I26M1D21M4D53M1D20M17D14M4I34M8D45M1I14M5I12M1I108M6I170M3D200M3D332M2618D108N599D8M7D53M3D27M9D15M2I22M133D39N4D51M6D26M11D55M30D91M2I48M2D114M5D43M16I64M15I34M84I33M104I16M2I24M1I46M9D25M10I18M4I27M4D17M14D33M6D171M3I704M27I55M X=5.6;ID=64.7
In addition, if some SDs have more than 2 copies, is there a subsequent process to aggregate many one-to-one corresponding mates into multi-copy SD mates?
Hi there, thanks for providing this excellent tool.
I have some questions about the
biseroutput results.There are some SD mates with very close genome distances. Does
biserhave a standard to distinguish SD from tandem duplication?I saw mates with overlapping positions in the results. Could you explain this result? Or should I filter these out of the final results?
In addition, if some SDs have more than 2 copies, is there a subsequent process to aggregate many one-to-one corresponding mates into multi-copy SD mates?