I used cellranger atac to run bamtofastq. The fastq output folder has "MissingLibrary". How do I set the sample name to a meaningful name instead of MissingLibrary? Also, the filename of fastq files starts with something like bamtofastq_S1_L001_I1_001.fastq.gz, how do I change the bamtofastq prefix to the actual sample name?
Hi,
I used cellranger atac to run bamtofastq. The fastq output folder has "MissingLibrary". How do I set the sample name to a meaningful name instead of MissingLibrary? Also, the filename of fastq files starts with something like bamtofastq_S1_L001_I1_001.fastq.gz, how do I change the bamtofastq prefix to the actual sample name?
The command line I used is:
Thanks