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10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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default no of mismatches allowed in cell ranger #115

Closed shabs24 closed 8 months ago

shabs24 commented 3 years ago

Hi,

What is default value for the number of mismatches allowed while aligning the reads to the genome or while filtering out the mapped reads. Which bam tag in the output bam indicates the no of mismatches?

Thanks