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10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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expect-cells #119

Closed BenxiaHu closed 2 years ago

BenxiaHu commented 3 years ago

hello, I try to run cellranger count on scRNAseq data. How to set expect-cells? Do you have any suggestions? Best,

evolvedmicrobe commented 2 years ago

You can use the --expect-cells argument on the command line per the instructions to do this, and we recommend that you set this flag if possible.