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10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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cellranger count How to modify the output path #124

Closed yanglq-bio closed 3 years ago

yanglq-bio commented 3 years ago

Hi, I’m using the Cellranger(the version is 6.6.0),When I running cellranger count --help,I can't find any parameters to modify the output path.

so,I want to know How can I change it.

mmfalco commented 3 years ago

Have you tried specifying the path in the --id(e.g. --id=/path/to/output/sample1) parameter?

evolvedmicrobe commented 3 years ago

We don't have a CR version 6.6.0 so am a little confused by that. As @mmfalco mentions, the --id parameter determines what the output folder is, though you cannot specify subdirectories, as '--id <ID>': must contain only letters, digits, underscores, and dashes.

yanglq-bio commented 3 years ago

yes ,I tried it.but got error

elaine

@. | 签名由网易邮箱大师定制 On 4/20/2021 @.> wrote：

Have you tried specifying the path in the --id(e.g. --id=/path/to/output/sample1) parameter?

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