search

10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
Other
356 stars 92 forks source link

Does cellranger support analyzing sequences obtained from other companies? #143

Closed rocketeer1998 closed 2 years ago

rocketeer1998 commented 2 years ago

I'm downloading a .fastq file from NCBI which were sequenced by BGI-SEQ 500. So I'm wondering whether this .fastq file can be imported as a cellranger count input?

Thanks for your patience to answer this general question!

evolvedmicrobe commented 2 years ago

Hi @rocketeer1998,

Cell Ranger can only be used to analyze 10X data, but it should work with any sequencing technology that produces conforming FASTQs.

Cheers, Nigel