unmatched symbol and ensembl_id in features.tsv.gz output file using official refdata-gex-GRCh38-2020-A

10XGenomics / cellranger

10x Genomics Single Cell Analysis

https://www.10xgenomics.com/support/software/cell-ranger

Other

340 stars 91 forks source link

unmatched symbol and ensembl_id in features.tsv.gz output file using official refdata-gex-GRCh38-2020-A #152

Closed MingwuDuan closed 8 months ago

MingwuDuan commented 2 years ago

Hi , I have run many times cellranger ( v.6.1.0 ) gene-expression pipeline using official refdata-gex-GRCh38-2020-A, finding that at line 28922 of unzipped features.tsv.gz ( i.e. features.tsv ) ENSG00000276085 CCL3L1 Gene Expression is not correct, since the ensembl GRCh38.p13 database shows ENSG00000276085 matches CCL3L3 and ENSG00000277336 matches CCL3L1. Anyone re-encounters this issue ?