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10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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how to solve SGE mode error #206

Closed felixlee0608 closed 1 year ago

felixlee0608 commented 1 year ago

File "/nfs1/public2/User/felix/Software/cellranger-7.1.0/lib/python/cellranger/constants.py", line 170, in aggr_files paths: list[str] TypeError: 'type' object is not subscriptable

cellranger count --id=xx_sge \
    --jobmode=sge \
    --maxjobs=20 \
    --jobinterval=20
elehnert10x commented 1 year ago

Thank you for your interest in Cell Ranger. GitHub Issues are not monitored by our support team. Please e-mail support@10xgenomics.com for support with Cell Ranger or visit our documentation site at https://www.10xgenomics.com/support/software/cell-ranger.