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10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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FASTQ file names with _001 #222

Closed Serena-Fang closed 8 months ago

Serena-Fang commented 1 year ago

On the website, it indicates that Cell Ranger requires the FASTQ files ending with _001. https://kb.10xgenomics.com/hc/en-us/articles/115003802691-How-do-I-prepare-Sequence-Read-Archive-SRA-data-from-NCBI-for-Cell-Ranger-

However, the files we got contain other suffixes than _001, eg. 002, 003, etc. Will Cell Ranger see all those additional files, or they all need to end with ‘001’ as the website seems to be suggesting?

elehnert10x commented 8 months ago

Thank you for your interest in Cell Ranger. GitHub Issues are not monitored by our support team. Please e-mail support@10xgenomics.com for support with Cell Ranger or visit our documentation site at https://www.10xgenomics.com/support/software/cell-ranger.