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10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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is_cell and high_confidence columns #245

Closed Egl-A closed 2 months ago

Egl-A commented 2 months ago

Thank you for the cell ranger vdj tool.

I was wondering how exactly the "is_cell" and "high-confidence" columns were computed in the annotation file. Is it based on sequencer data ? The barcode sequence or the total number of reads ? Would it be recommended to use all_contig instead of fitlered_contig ?

Thank you in advance!

github-actions[bot] commented 2 months ago

Thank you for your interest in Cell Ranger. GitHub Issues are not monitored by our support team. Please e-mail support@10xgenomics.com for support with Cell Ranger or visit our documentation site at https://www.10xgenomics.com/support/software/cell-ranger.