10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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[question] on bcl2fastq trimming options #40

Closed sunta3iouxos closed 10 months ago

sunta3iouxos commented 5 years ago

Hi all, in your notes of bcl2fastq2 you are mentioning that the default options fro the following valueas are modified. Could you please care to wrote the changes from the default values:

These bcl2fastq arguments are overridden by this pipeline: --fastq-cluster-count --minimum-trimmed-read-length --mask-short-adapter-reads

thank you all