Where is Cellranger for Python 3?

[benstaf]

Hi, I have python 3.7 in Anaconda and I can't install CellRanger. This repo is for Python 2.7, which is deprecated.

Where is CellRanger for Python 3?

[evolvedmicrobe]

Hi @mostafachatillon, Cell Ranger is a program composed of a variety of components and languages (Python, Go, Rust, Bash, Javascript) as well as associated third-party libraries. At present, at present it is not distributed as part of the anaconda ecosystem, but is available from: https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest

[benstaf]

Cell Ranger is distributed in anaconda here:

https://anaconda.org/hcc/cellranger

On Tue, Jan 14, 2020, 7:31 PM Nigel Delaney notifications@github.com wrote:

Hi @mostafachatillon https://github.com/mostafachatillon, Cell Ranger is a program composed of a variety of components and languages (Python, Go, Rust, Bash, Javascript) as well as associated third-party libraries. At present, at present it is not distributed as part of the anaconda ecosystem, but is available from: https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/10XGenomics/cellranger/issues/52?email_source=notifications&email_token=AB6N6FAGXSSWN6GSTPXQP2LQ5YAJLA5CNFSM4KGVGEJ2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEI5UTZA#issuecomment-574310884, or unsubscribe https://github.com/notifications/unsubscribe-auth/AB6N6FECOMOY47GHUKWVFU3Q5YAJLANCNFSM4KGVGEJQ .

[evolvedmicrobe]

Oh cool! That looks like it's distributed by the University of Nebraska, and uses the old 3.0.2 version.

https://github.com/unlhcc/hcc-conda-recipes/blob/master/recipes/cellranger/3.0.2/build.sh

I'd contact that Git repo for further assistance with the conda package. At present 10X only supports a direct download or a clone of this code repository.

Also feel free to contact support@10xgenomics.com for further help.