Closed benstaf closed 4 years ago
Hi @mostafachatillon, Cell Ranger is a program composed of a variety of components and languages (Python, Go, Rust, Bash, Javascript) as well as associated third-party libraries. At present, at present it is not distributed as part of the anaconda ecosystem, but is available from: https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest
Cell Ranger is distributed in anaconda here:
https://anaconda.org/hcc/cellranger
On Tue, Jan 14, 2020, 7:31 PM Nigel Delaney notifications@github.com wrote:
Hi @mostafachatillon https://github.com/mostafachatillon, Cell Ranger is a program composed of a variety of components and languages (Python, Go, Rust, Bash, Javascript) as well as associated third-party libraries. At present, at present it is not distributed as part of the anaconda ecosystem, but is available from: https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest
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Oh cool! That looks like it's distributed by the University of Nebraska, and uses the old 3.0.2
version.
https://github.com/unlhcc/hcc-conda-recipes/blob/master/recipes/cellranger/3.0.2/build.sh
I'd contact that Git repo for further assistance with the conda package. At present 10X only supports a direct download or a clone of this code repository.
Also feel free to contact support@10xgenomics.com for further help.
Hi, I have python 3.7 in Anaconda and I can't install CellRanger. This repo is for Python 2.7, which is deprecated.
Where is CellRanger for Python 3?