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10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
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How to Pip Install CellRanger ? #53

Closed benstaf closed 4 years ago

benstaf commented 4 years ago

I am using Google Colab, and I want to install CellRanger, which can only be done with Pip or apt-get. How to do that?

evolvedmicrobe commented 4 years ago

The whole of Cell Ranger and it's dependencies is not available on PyPi, you may however be able to use a limited set of functionality by appending ../lib/python/ to the PYTHONPATH

TheAustinator commented 3 years ago

@evolvedmicrobe would it be possible to add a setup.py in ../lib/python/cellranger so that it could be manually installed?