Closed yejg2017 closed 4 years ago
The fastq reqd file types need to be consistent, so either all files must have an I1
or none of them should. Feel free to reach out to support@10xgenomics.com for more information.
Thanks!And I want to ask for help for an another problem.When I run cellranger-atac count with fastqs: CAT-08_S1_L001_I1_001.fastq.gz CAT-08_S1_L001_R1_001.fastq.gz CAT-08_S1_L001_R2_001.fastq.gz CAT-08_S1_L001_R3_001.fastq.gz CAT-08_S2_L001_I1_001.fastq.gz CAT-08_S2_L001_R1_001.fastq.gz CAT-08_S2_L001_R2_001.fastq.gz CAT-08_S2_L001_R3_001.fastq.gz CAT-08_S3_L001_I1_001.fastq.gz CAT-08_S3_L001_R1_001.fastq.gz CAT-08_S3_L001_R2_001.fastq.gz CAT-08_S3_L001_R3_001.fastq.gz CAT-08_S4_L001_I1_001.fastq.gz CAT-08_S4_L001_R1_001.fastq.gz CAT-08_S4_L001_R2_001.fastq.gz CAT-08_S4_L001_R3_001.fastq.gz
The log file told me the error: [error] Input FASTQ file is not gzipped but filename has CAT-08_S1_L001_R2_001.fastq.gz suffix: .gz
When I run cellranger count with fastsqs: DME-6_S1_L001_I1_001.fastq.gz DME-6_S1_L001_R1_001.fastq.gz DME-6_S1_L001_R2_001.fastq.gz DME-6_S2_L001_R1_001.fastq.gz DME-6_S2_L001_R2_001.fastq.gz DME-6_S3_L001_I1_001.fastq.gz DME-6_S3_L001_R1_001.fastq.gz DME-6_S3_L001_R2_001.fastq.gz DME-6_S4_L001_R1_001.fastq.gz DME-6_S4_L001_R2_001.fastq.gz And I got this error,but the tutorial tell me that the I1 index file is optional,I do not how to fixed this issue,Counld you help me?Thanks