Thanks!And I want to ask for help for an another problem.When I run cellranger-atac count with fastqs:
CAT-08_S1_L001_I1_001.fastq.gz
CAT-08_S1_L001_R1_001.fastq.gz
CAT-08_S1_L001_R2_001.fastq.gz
CAT-08_S1_L001_R3_001.fastq.gz
CAT-08_S2_L001_I1_001.fastq.gz
CAT-08_S2_L001_R1_001.fastq.gz
CAT-08_S2_L001_R2_001.fastq.gz
CAT-08_S2_L001_R3_001.fastq.gz
CAT-08_S3_L001_I1_001.fastq.gz
CAT-08_S3_L001_R1_001.fastq.gz
CAT-08_S3_L001_R2_001.fastq.gz
CAT-08_S3_L001_R3_001.fastq.gz
CAT-08_S4_L001_I1_001.fastq.gz
CAT-08_S4_L001_R1_001.fastq.gz
CAT-08_S4_L001_R2_001.fastq.gz
CAT-08_S4_L001_R3_001.fastq.gz
The log file told me the error: [error] Input FASTQ file is not gzipped but filename has CAT-08_S1_L001_R2_001.fastq.gz suffix: .gz
Thanks!And I want to ask for help for an another problem.When I run cellranger-atac count with fastqs: CAT-08_S1_L001_I1_001.fastq.gz CAT-08_S1_L001_R1_001.fastq.gz CAT-08_S1_L001_R2_001.fastq.gz CAT-08_S1_L001_R3_001.fastq.gz CAT-08_S2_L001_I1_001.fastq.gz CAT-08_S2_L001_R1_001.fastq.gz CAT-08_S2_L001_R2_001.fastq.gz CAT-08_S2_L001_R3_001.fastq.gz CAT-08_S3_L001_I1_001.fastq.gz CAT-08_S3_L001_R1_001.fastq.gz CAT-08_S3_L001_R2_001.fastq.gz CAT-08_S3_L001_R3_001.fastq.gz CAT-08_S4_L001_I1_001.fastq.gz CAT-08_S4_L001_R1_001.fastq.gz CAT-08_S4_L001_R2_001.fastq.gz CAT-08_S4_L001_R3_001.fastq.gz
The log file told me the error: [error] Input FASTQ file is not gzipped but filename has CAT-08_S1_L001_R2_001.fastq.gz suffix: .gz
Originally posted by @yejg2017 in https://github.com/10XGenomics/cellranger/issues/72#issuecomment-612715918