search

10XGenomics / cellranger

10x Genomics Single Cell Analysis
https://www.10xgenomics.com/support/software/cell-ranger
Other
348 stars 92 forks source link

Mapping FASTQs with de novo transcriptome assembly #77

Closed s849 closed 10 months ago

s849 commented 4 years ago

Hi,

I am wondering whether it is possible to map raw FASTQ files to a transcriptome (.fa) that was assembled de novo? Is there documentation that I can use as an example? Is a GTF also required?

Thanks,