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10XGenomics
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rust-debruijn
De Bruijn graphs in Rust
MIT License
63
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Add performance optimizations
#38
evolp
closed
1 month ago
0
max_path ignores path validity when choosing next node
#37
evolp
opened
3 months ago
0
Update bit-set requirement from 0.5.1 to 0.8.0
#36
dependabot[bot]
opened
3 months ago
0
Update bit-set requirement from 0.5.1 to 0.6.0
#35
dependabot[bot]
closed
3 months ago
1
Bump actions/cache from 3 to 4
#34
dependabot[bot]
closed
6 months ago
0
update to boomphf 0.6
#33
pmarks
closed
1 year ago
0
ci: update workflow actions
#32
adam-azarchs
closed
1 year ago
0
Update pretty_assertions requirement from 0.5 to 1.3
#31
dependabot[bot]
closed
1 year ago
1
Update rand requirement from 0.5 to 0.8
#30
dependabot[bot]
opened
1 year ago
1
deps: Add dependabot config to make sure dependencies are up to date
#29
bgianfo
closed
1 year ago
0
fix(ci): Update to `ubuntu-latest` for actions, as 18.04 no longer works
#28
bgianfo
closed
1 year ago
0
Update to 2021 edition.
#27
adam-azarchs
closed
2 years ago
0
Enable clippy in CI and fix lints.
#26
adam-azarchs
closed
3 years ago
0
Array-backed kmers w/ parameters set by const-generics
#25
pmarks
opened
3 years ago
0
switch to const generics for selecting K
#24
pmarks
opened
3 years ago
0
Replace `num` with `num_traits`
#23
evolvedmicrobe
closed
3 years ago
3
Allow update of num to 0.4.
#22
adam-azarchs
closed
3 years ago
0
DnaStringSlice should abstract away the backing DnaString rc status
#21
d-cameron
opened
3 years ago
1
Documentation clarification
#20
d-cameron
closed
3 years ago
3
Upgrade non-doc comments to doc comments
#19
dcroote
closed
3 years ago
1
Speed up bitopts_avx2
#18
Daniel-Liu-c0deb0t
closed
4 years ago
3
faster DnaString construction
#17
pmarks
closed
4 years ago
1
speed up ndiffs using code from Pat
#16
DavidBJaffe
closed
4 years ago
1
allow lowercase bases in from_acgt_bytes_hashn
#15
jgarthur
closed
4 years ago
1
overhaul MSP and greatly improve tests.
#14
pmarks
closed
4 years ago
0
Pmarks/remove equiv classes
#13
pmarks
closed
4 years ago
0
add function ndiffs
#12
DavidBJaffe
closed
5 years ago
1
Should we slice when continuous shards are going to the same bucket ?
#11
k3yavi
closed
5 years ago
2
Problem with the repetitive sequence
#10
k3yavi
closed
5 years ago
6
update to Rust 2018 - minor changes
#9
pmarks
closed
5 years ago
0
switch to updated boomphf
#8
pmarks
closed
5 years ago
1
switch bit layout of DnaString to match Kmers -- makes get_kmer() fas…
#7
pmarks
closed
5 years ago
5
add support for k=12 and fix typo in documentation
#6
DavidBJaffe
closed
5 years ago
0
dj/fix eq for dna string slice
#5
DavidBJaffe
closed
6 years ago
1
add support for k=20
#4
DavidBJaffe
closed
6 years ago
1
CounterFilterEqClass.get_eq_classes shouldn't consume self
#3
jgarthur
closed
6 years ago
0
Boomphf support & various fixes.
#2
pmarks
closed
6 years ago
1
BoomPHF compatibility
#1
k3yavi
closed
6 years ago
0