danshu
commented
3 years ago Here is the another report when running using the linux binary sc_hla_count_linux.
name = 'sc_hla_count'
operating_system = 'unix:CentOS'
crate_version = '0.1.0'
explanation = '''
Panic occurred in file 'src/libcore/option.rs' at line 347
'''
method = 'Panic'
backtrace = '''
stack backtrace:
0: backtrace::backtrace::libunwind::trace::hb73dfa724f78bc0d (0x5558f6e8fa07)
at /mnt/home/patrick/.cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/backtrace/libunwind.rs:88
backtrace::backtrace::trace_unsynchronized::hd68d5720b8eeecb4
at /mnt/home/patrick/.cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/backtrace/mod.rs:66
backtrace::backtrace::trace::h07a8a1b16091cf6f
at /mnt/home/patrick/.cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/backtrace/mod.rs:53
1: backtrace::capture::Backtrace::create::ha2012ed583b4dee0 (0x5558f6e8ef63)
at /mnt/home/patrick/.cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/capture.rs:163
backtrace::capture::Backtrace::new::h2402c178e424aa5f
at /mnt/home/patrick/.cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/capture.rs:127
2: human_panic::report::Report::new::h5e9fc17a20b5f651 (0x5558f6e7def7)
at /mnt/home/patrick/.cargo/registry/src/github.com-1ecc6299db9ec823/human-panic-1.0.1/src/report.rs:45
3: human_panic::handle_dump::h6497bba18125ae8e (0x5558f6e7d5e7)
at /mnt/home/patrick/.cargo/registry/src/github.com-1ecc6299db9ec823/human-panic-1.0.1/src/lib.rs:197
4: sc_hla_count::main::{{closure}}::h4d1b937fa8891909 (0x5558f6dcf129)
at /mnt/home/pat/code/scHLAcount/<::human_panic::setup_panic macros>:18
5: std::panicking::rust_panic_with_hook::hffcefc09751839d1 (0x5558f6fb5da9)
at src/libstd/panicking.rs:481
6: std::panicking::continue_panic_fmt::hc0f142c930c846fc (0x5558f6fb5842)
at src/libstd/panicking.rs:384
7: rust_begin_unwind (0x5558f6fb5726)
at src/libstd/panicking.rs:311
8: core::panicking::panic_fmt::h2daf88b2616ca2b2 (0x5558f6fd4a3d)
at src/libcore/panicking.rs:85
9: core::panicking::panic::h2d0bc53a963fb996 (0x5558f6fd497c)
at src/libcore/panicking.rs:49
10: core::option::Option
Hello,
I'm trying to run scHLAcount but having this error.
Sharding sequences... Got 373889 sequence chunks Assembling 114 shards...
Done separate de Bruijn graph construction Starting merging disjoint graphs Merger of graphs complete Indexing de Bruijn graph Total 58019 kmers to process in dbg Making mphf of kmers Assigning offsets to kmers [0m[31mWell, this is embarrassing.
sc_hla_count had a problem and crashed. To help us diagnose the problem you can send us a crash report.
name = 'sc_hla_count' operating_system = 'unix:CentOS' crate_version = '0.1.0' explanation = ''' Panic occurred in file 'src/mapping.rs' at line 52 ''' method = 'Panic' backtrace = ''' stack backtrace: 0: backtrace::backtrace::libunwind::trace::h3b4dbc2ad001faa5 (0x555cc902bdb7) at /research/kevinyip12/jqcao/tools/HLA/scHLAcount/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/backtrace/libunwind.rs:88 backtrace::backtrace::trace_unsynchronized::h77d6568b33e3258f at /research/kevinyip12/jqcao/tools/HLA/scHLAcount/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/backtrace/mod.rs:66 backtrace::backtrace::trace::h47c6435d0453bfe0 at /research/kevinyip12/jqcao/tools/HLA/scHLAcount/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/backtrace/mod.rs:53 1: backtrace::capture::Backtrace::create::ha7dcae36bc2f2bde (0x555cc902b315) at /research/kevinyip12/jqcao/tools/HLA/scHLAcount/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/capture.rs:163 backtrace::capture::Backtrace::new::h92bc83138b1926c0 at /research/kevinyip12/jqcao/tools/HLA/scHLAcount/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.35/src/capture.rs:127 2: human_panic::report::Report::new::h1cbf997f6d47b7d3 (0x555cc901b749) at /research/kevinyip12/jqcao/tools/HLA/scHLAcount/registry/src/github.com-1ecc6299db9ec823/human-panic-1.0.1/src/report.rs:45 3: human_panic::handle_dump::h1add66df506345a8 (0x555cc901af13) at /research/kevinyip12/jqcao/tools/HLA/scHLAcount/registry/src/github.com-1ecc6299db9ec823/human-panic-1.0.1/src/lib.rs:197 4: sc_hla_count::main::{{closure}}::h4b47b3fa03a044b7 (0x555cc8d8b729) at /research/kevinyip12/jqcao/tools/HLA/scHLAcount/registry/src/github.com-1ecc6299db9ec823/human-panic-1.0.1/src/lib.rs:120 5: std::panicking::rust_panic_with_hook::he82f5d0644692441 (0x555cc9141668) at src/libstd/panicking.rs:530 6: rust_begin_unwind (0x555cc914123b) at src/libstd/panicking.rs:437 7: core::panicking::panic_fmt::h09c929f06bb87c98 (0x555cc9166891) at src/libcore/panicking.rs:85 8: core::panicking::panic::h7ece43057e5422d4 (0x555cc91667dd) at src/libcore/panicking.rs:50 9: core::option::Option::unwrap::h2b3d96d5cd337084 (0x555cc8d65298)
at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libcore/macros/mod.rs:10
sc_hla_count::mapping::BamSeqReader::fetch::h49bde93d68dcce94
at src/mapping.rs:52
sc_hla_count::mapping::mapping_wrapper::hebc162172d078d87
at src/mapping.rs:317
10: sc_hla_count::_main::h3253537751c2ae0e (0x555cc8d915e6)
at src/main.rs:198
11: sc_hla_count::main::h6c74ee357aa88633 (0x555cc8d8b4cf)
at src/main.rs:139
12: std::rt::lang_start::{{closure}}::h4a39b9fb10bdccb7 (0x555cc8d76bf3)
at /rustc/04488afe34512aa4c33566eb16d8c912a3ae04f9/src/libstd/rt.rs:67
13: std::rt::lang_start_internal::{{closure}}::h5d3ea623498f5f43 (0x555cc9141ae3)
at src/libstd/rt.rs:52
std::panicking::try::do_call::hac65e71be769a440
at src/libstd/panicking.rs:348
std::panicking::try::hd4706e264bcf6712
at src/libstd/panicking.rs:325
std::panic::catch_unwind::h948a0fb4a8b3ee82
at src/libstd/panic.rs:394
std::rt::lang_start_internal::h72cc068ed2d0ac53
at src/libstd/rt.rs:51
14: main (0x555cc8d93788)
15: __libc_start_main (0x7f4f89c2e505)
16: (0x555cc8d46dcf)
17: (0x0)'''