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10XGenomics / scHLAcount

Count HLA alleles in single-cell RNA-seq data
MIT License
59 stars 12 forks source link

bug in prepare_reference.sh? #17

Open onecarbon opened 3 years ago

onecarbon commented 3 years ago

Hi

Thanks for the software!

I was unable to get prepare_reference.sh to finish without removing the extra "" in the sed calls. Is this meant to be there?

KforKuma commented 3 years ago

you are right, the original code returned me this: sed: 无法读取 s/>HLA:HLA00037/>HLA:HLA00037 A*03:01:01:01 1098 bp/g: 没有那个文件或目录 sed: 无法读取 s/>HLA:HLA00132/>HLA:HLA00132 B*07:02:01:01 1089 bp/g: 没有那个文件或目录 but after delete the extra "" it works.

agneantanaviciute commented 2 years ago

Deleting the extra "" worked for me as well - thank you for the fix suggestion!