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10XGenomics / scHLAcount

Count HLA alleles in single-cell RNA-seq data
MIT License
59 stars 12 forks source link

error[E0463]: can't find crate for `std` when compiling from source #5

Closed YiweiNiu closed 5 years ago

YiweiNiu commented 5 years ago

Hi,

I am trying to compiling scHLAcount from source code, since the the binary version requires high version of GLIBC.

Here is the code and the error information

$  git clone git@github.com:10XGenomics/scHLAcount.git scHLAcount.0.1.0
$ cd scHLAcount.0.1.0
$ cargo build --release
...
   Compiling proc-macro2 v0.4.30
   Compiling semver-parser v0.7.0
   Compiling proc-macro2 v1.0.1
   Compiling unicode-xid v0.1.0
   Compiling unicode-xid v0.2.0
   Compiling syn v0.15.44
   Compiling libc v0.2.62
   Compiling cc v1.0.41
   Compiling syn v1.0.5
   Compiling arrayvec v0.4.11
   Compiling memchr v2.2.1
   Compiling autocfg v0.1.6
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `proc-macro2`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `autocfg`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `syn`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `proc-macro2`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `core`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `unicode-xid`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `core`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `unicode-xid`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `libc`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `syn`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `cc`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `semver-parser`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `arrayvec`.
warning: build failed, waiting for other jobs to finish...
error[E0463]: can't find crate for `std`

error: aborting due to previous error

For more information about this error, try `rustc --explain E0463`.
error: Could not compile `memchr`.

To learn more, run the command again with --verbose.

$ rustc --explain E0463
A plugin/crate was declared but cannot be found. Erroneous code example:

#![feature(plugin)]
#![plugin(cookie_monster)] // error: can't find crate for `cookie_monster`
extern crate cake_is_a_lie; // error: can't find crate for `cake_is_a_lie`

You need to link your code to the relevant crate in order to be able to use it
(through Cargo or the `-L` option of rustc example). Plugins are crates as
well, and you link to them the same way.

I tried Google but could not find anything helpful, and I know nothing about Rust.

Do you know how to solve this? Any comments or help would be appreciated.

Bests, Yiwei Niu

cdarby commented 5 years ago

This looks like an issue with your Cargo's ability to find packages, not specifically with our software. Please consult the language's documentation on how to install the compiler so that it can automatically get the required crates. @ifiddes-10x We may be able to support other systems with binaries, we'll update releases if so.

YiweiNiu commented 5 years ago

Thank you for your reply!

I re-installed Rust and compiled again. But I encountered the following error.

niuyw@admin:~/software/scHLAcount.0.1.0$ RUST_BACKTRACE=1 cargo build --release
   Compiling rust-htslib v0.24.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=18072e0faf909ed19da4d1226a35c239a4b4292e#18072e0f)
error: failed to run custom build command for `rust-htslib v0.24.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=18072e0faf909ed19da4d1226a35c239a4b4292e#18072e0f)`

Caused by:
  process didn't exit successfully: `/home/niuyw/software/scHLAcount.0.1.0/target/release/build/rust-htslib-0ea205827c1d0764/build-script-build` (exit code: 101)
--- stdout
OPT_LEVEL = Some("3")
TARGET = Some("x86_64-unknown-linux-gnu")
HOST = Some("x86_64-unknown-linux-gnu")
CC_x86_64-unknown-linux-gnu = None
CC_x86_64_unknown_linux_gnu = None
HOST_CC = None
CC = None
CFLAGS_x86_64-unknown-linux-gnu = None
CFLAGS_x86_64_unknown_linux_gnu = None
HOST_CFLAGS = None
CFLAGS = None
CRATE_CC_NO_DEFAULTS = None
DEBUG = Some("true")
echo '/* Default config.h generated by Makefile */' > config.h
echo '#define HAVE_LIBBZ2 1' >> config.h
echo '#define HAVE_LIBLZMA 1' >> config.h
echo '#define HAVE_LZMA_H 1' >> config.h
echo '#define HAVE_FSEEKO 1' >> config.h
echo '#define HAVE_DRAND48 1' >> config.h
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o kfunc.o kfunc.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o knetfile.o knetfile.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o kstring.o kstring.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o bcf_sr_sort.o bcf_sr_sort.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o bgzf.o bgzf.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o errmod.o errmod.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o faidx.o faidx.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o hfile.o hfile.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o hfile_net.o hfile_net.c
echo '#define HTS_VERSION "1.9-1-gd2c86b3"' > version.h
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o hts.o hts.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o hts_os.o hts_os.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o md5.o md5.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o multipart.o multipart.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o probaln.o probaln.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o realn.o realn.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o regidx.o regidx.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o sam.o sam.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o synced_bcf_reader.o synced_bcf_reader.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o vcf_sweep.o vcf_sweep.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o tbx.o tbx.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o textutils.o textutils.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o thread_pool.o thread_pool.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o vcf.o vcf.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o vcfutils.o vcfutils.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/cram_codecs.o cram/cram_codecs.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/cram_decode.o cram/cram_decode.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/cram_encode.o cram/cram_encode.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/cram_external.o cram/cram_external.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/cram_index.o cram/cram_index.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/cram_io.o cram/cram_io.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/cram_samtools.o cram/cram_samtools.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/cram_stats.o cram/cram_stats.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/files.o cram/files.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/mFILE.o cram/mFILE.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/open_trace_file.o cram/open_trace_file.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/pooled_alloc.o cram/pooled_alloc.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/rANS_static.o cram/rANS_static.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/sam_header.o cram/sam_header.c
cc -O3 -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include -I.  -c -o cram/string_alloc.o cram/string_alloc.c
ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o
ranlib libhts.a
running: "cc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-static" "-I" "/home/niuyw/software/scHLAcount.0.1.0/target/release/build/bzip2-sys-65b10b80b0074e34/out/include" "-o" "/home/niuyw/software/scHLAcount.0.1.0/target/release/build/rust-htslib-146bb840a8acec7b/out/wrapper.o" "-c" "wrapper.c"
exit code: 0
AR_x86_64-unknown-linux-gnu = None
AR_x86_64_unknown_linux_gnu = None
HOST_AR = None
AR = None
running: "ar" "crs" "/home/niuyw/software/scHLAcount.0.1.0/target/release/build/rust-htslib-146bb840a8acec7b/out/libwrapper.a" "/home/niuyw/software/scHLAcount.0.1.0/target/release/build/rust-htslib-146bb840a8acec7b/out/wrapper.o"
exit code: 0
cargo:rustc-link-lib=static=wrapper
cargo:rustc-link-search=native=/home/niuyw/software/scHLAcount.0.1.0/target/release/build/rust-htslib-146bb840a8acec7b/out
cargo:warning=couldn't execute `llvm-config --prefix` (error: No such file or directory (os error 2))
cargo:warning=set the LLVM_CONFIG_PATH environment variable to a valid `llvm-config` executable

--- stderr
thread 'main' panicked at 'Unable to find libclang: "couldn\'t find any valid shared libraries matching: [\'libclang.so\', \'libclang-*.so\', \'libclang.so.*\'], set the `LIBCLANG_PATH` environment variable to a path where one of these files can be found (invalid: [])"', src/libcore/result.rs:999:5
stack backtrace:
   0: backtrace::backtrace::libunwind::trace
             at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/libunwind.rs:88
   1: backtrace::backtrace::trace_unsynchronized
             at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/mod.rs:66
   2: std::sys_common::backtrace::_print
             at src/libstd/sys_common/backtrace.rs:47
   3: std::sys_common::backtrace::print
             at src/libstd/sys_common/backtrace.rs:36
   4: std::panicking::default_hook::{{closure}}
             at src/libstd/panicking.rs:200
   5: std::panicking::default_hook
             at src/libstd/panicking.rs:214
   6: std::panicking::rust_panic_with_hook
             at src/libstd/panicking.rs:477
   7: std::panicking::continue_panic_fmt
             at src/libstd/panicking.rs:384
   8: rust_begin_unwind
             at src/libstd/panicking.rs:311
   9: core::panicking::panic_fmt
             at src/libcore/panicking.rs:85
  10: core::result::unwrap_failed
             at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libcore/macros.rs:18
  11: core::result::Result<T,E>::expect
             at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libcore/result.rs:827
  12: <bindgen::ensure_libclang_is_loaded::LIBCLANG as core::ops::deref::Deref>::deref::__static_ref_initialize
             at /home/niuyw/.cargo/registry/src/mirrors.ustc.edu.cn-61ef6e0cd06fb9b8/bindgen-0.51.0/src/lib.rs:1711
  13: core::ops::function::FnOnce::call_once
             at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libcore/ops/function.rs:231
  14: lazy_static::lazy::Lazy<T>::get::{{closure}}
             at /home/niuyw/.cargo/registry/src/mirrors.ustc.edu.cn-61ef6e0cd06fb9b8/lazy_static-1.4.0/src/inline_lazy.rs:31
  15: std::sync::once::Once::call_once::{{closure}}
             at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/sync/once.rs:225
  16: std::sync::once::Once::call_inner
             at src/libstd/sync/once.rs:392
  17: std::sync::once::Once::call_once
             at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/sync/once.rs:225
  18: lazy_static::lazy::Lazy<T>::get
             at /home/niuyw/.cargo/registry/src/mirrors.ustc.edu.cn-61ef6e0cd06fb9b8/lazy_static-1.4.0/src/inline_lazy.rs:30
  19: <bindgen::ensure_libclang_is_loaded::LIBCLANG as core::ops::deref::Deref>::deref::__stability
             at /home/niuyw/.cargo/registry/src/mirrors.ustc.edu.cn-61ef6e0cd06fb9b8/bindgen-0.51.0/<::lazy_static::__lazy_static_internal macros>:12
  20: <bindgen::ensure_libclang_is_loaded::LIBCLANG as core::ops::deref::Deref>::deref
             at /home/niuyw/.cargo/registry/src/mirrors.ustc.edu.cn-61ef6e0cd06fb9b8/bindgen-0.51.0/<::lazy_static::__lazy_static_internal macros>:13
  21: bindgen::ensure_libclang_is_loaded
             at /home/niuyw/.cargo/registry/src/mirrors.ustc.edu.cn-61ef6e0cd06fb9b8/bindgen-0.51.0/src/lib.rs:1718
  22: bindgen::Bindings::generate
             at /home/niuyw/.cargo/registry/src/mirrors.ustc.edu.cn-61ef6e0cd06fb9b8/bindgen-0.51.0/src/lib.rs:1733
  23: bindgen::Builder::generate
             at /home/niuyw/.cargo/registry/src/mirrors.ustc.edu.cn-61ef6e0cd06fb9b8/bindgen-0.51.0/src/lib.rs:1228
  24: build_script_build::main
             at ./build.rs:84
  25: std::rt::lang_start::{{closure}}
             at /rustc/eae3437dfe991621e8afdc82734f4a172d7ddf9b/src/libstd/rt.rs:64
  26: std::rt::lang_start_internal::{{closure}}
             at src/libstd/rt.rs:49
  27: std::panicking::try::do_call
             at src/libstd/panicking.rs:296
  28: __rust_maybe_catch_panic
             at src/libpanic_unwind/lib.rs:82
  29: std::panicking::try
             at src/libstd/panicking.rs:275
  30: std::panic::catch_unwind
             at src/libstd/panic.rs:394
  31: std::rt::lang_start_internal
             at src/libstd/rt.rs:48
  32: main
  33: __libc_start_main
  34: <unknown>

Sorry if the question is too obvious.

Bests, Yiwei Niu

pmarks commented 5 years ago

@YiweiNiu I've added a new binary build that will work on older linuxes: https://github.com/10XGenomics/scHLAcount/releases/download/0.1.0/sc_hla_count_linux

To build from source, you need to install the following packages: llvm-dev libclang-dev and clang (see here for details)

YiweiNiu commented 5 years ago

Thank you very much! The binary works now.