Open DebbieCG opened 4 years ago
.plot_heatmap_and_write_genes(n_clust=10, tsne_df=tdf_n_1000, mat=m_n_1000, genes=use_genes_n_id[1:1000], dir=file.path(RES_DIR,"k10_marker_genes.tsv")) markers <- c("HLA-DRA","CD3D","CD8A","NKG7") .plot_gene_expression(markers=markers, genes=all_data[[1]]$hg19$gene_symbols, mat=all_data[[1]]$hg19$mat, tsne_df=tdf_n_1000, style='type1', title='pbmc68k', dir=RES_DIR)
gives the following error: Error in .plot_heatmap_and_write_genes(n_clust = 10, tsne_df = tdf_n_1000, : could not find function ".plot_heatmap_and_write_genes"
.plot_heatmap_and_write_genes(n_clust=10, tsne_df=tdf_n_1000, mat=m_n_1000, genes=use_genes_n_id[1:1000], dir=file.path(RES_DIR,"k10_marker_genes.tsv")) markers <- c("HLA-DRA","CD3D","CD8A","NKG7") .plot_gene_expression(markers=markers, genes=all_data[[1]]$hg19$gene_symbols, mat=all_data[[1]]$hg19$mat, tsne_df=tdf_n_1000, style='type1', title='pbmc68k', dir=RES_DIR)
gives the following error: Error in .plot_heatmap_and_write_genes(n_clust = 10, tsne_df = tdf_n_1000, : could not find function ".plot_heatmap_and_write_genes"