10XGenomics / thermite

Spliced short read aligner implemented in Rust
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New metrics and new data #24

Closed emreerhan closed 3 years ago

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281908 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281916 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 reads on same gene fraction: 0.9548562096930444

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281886 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.351726 file1 and file2 reads on same gene fraction: 0.9546569238008248

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281912 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.351538 file1 and file2 reads on same gene fraction: 0.9542140662625591

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.28191 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.351506 file1 and file2 reads on same gene fraction: 0.9539815660549696

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281904 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.351704 file1 and file2 reads on same gene fraction: 0.9545462094162585 file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam file1 identical alignment to ref fraction: 0.984348 file2 identical alignment to ref fraction: 0.810988 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.180946 file1 and file2 reads on same chr fraction: 0.819054 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.819054 file1 and file2 reads on same gene fraction: 1.0

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907 file2 identical alignment to ref fraction: 0.282 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631 file1 and file2 reads on same chr fraction: 0.369 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.352 file1 and file2 reads on same gene fraction: 0.954 file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam file1 identical alignment to ref fraction: 0.984 file2 identical alignment to ref fraction: 0.811 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.181 file1 and file2 reads on same chr fraction: 0.819 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.819 file1 and file2 reads on same gene fraction: 1.0

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907 file2 identical alignment to ref fraction: 0.282 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631 file1 and file2 reads on same chr fraction: 0.369 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.35 file1 and file2 reads on same gene fraction: 0.954 file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam file1 identical alignment to ref fraction: 0.984 file2 identical alignment to ref fraction: 0.811 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.181 file1 and file2 reads on same chr fraction: 0.819 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.82 file1 and file2 reads on same gene fraction: 1.0

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907 file2 identical alignment to ref fraction: 0.282 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631 file1 and file2 reads on same chr fraction: 0.369 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.35 file1 and file2 reads on same gene fraction: 0.954 file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam file1 identical alignment to ref fraction: 0.984 file2 identical alignment to ref fraction: 0.811 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.181 file1 and file2 reads on same chr fraction: 0.819 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.82 file1 and file2 reads on same gene fraction: 1.0

github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam

metric fraction
file1 identical alignment to ref 0.907
file2 identical alignment to ref 0.282
file1 unaligned reads 0.0
file2 unaligned reads 0.631
file1 and file2 reads on same chr 0.369
file1 and file2 identical alignments 0.0
file1 and file2 overlapping align 0.35
file1 and file2 reads on same gene 0.956

file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam

metric fraction
file1 identical alignment to ref 0.984
file2 identical alignment to ref 0.811
file1 unaligned reads 0.0
file2 unaligned reads 0.181
file1 and file2 reads on same chr 0.819
file1 and file2 identical alignments 0.0
file1 and file2 overlapping align 0.82
file1 and file2 reads on same gene 1.0
github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam

metric fraction
file1 identical alignment to ref 0.907
file2 identical alignment to ref 0.282
file1 unaligned reads 0.0
file2 unaligned reads 0.631
file1 and file2 reads on same chr 0.369
file1 and file2 identical alignments 0.0
file1 and file2 overlapping align 0.35
file1 and file2 reads on same gene 0.956

file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam

metric fraction
file1 identical alignment to ref 0.984
file2 identical alignment to ref 0.811
file1 unaligned reads 0.0
file2 unaligned reads 0.181
file1 and file2 reads on same chr 0.819
file1 and file2 identical alignments 0.0
file1 and file2 overlapping align 0.82
file1 and file2 reads on same gene 1.0
github-actions[bot] commented 3 years ago

file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam

metric fraction
file1 identical alignment to ref 0.907
file2 identical alignment to ref 0.282
file1 unaligned reads 0.0
file2 unaligned reads 0.631
file1 and file2 reads on same chr 0.369
file1 and file2 identical alignments 0.0
file1 and file2 overlapping align 0.35
file1 and file2 reads on same gene 0.956

file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam

metric fraction
file1 identical alignment to ref 0.984
file2 identical alignment to ref 0.811
file1 unaligned reads 0.0
file2 unaligned reads 0.181
file1 and file2 reads on same chr 0.819
file1 and file2 identical alignments 0.0
file1 and file2 overlapping align 0.82
file1 and file2 reads on same gene 1.0