Closed emreerhan closed 3 years ago
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281916 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 reads on same gene fraction: 0.9548562096930444
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281886 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.351726 file1 and file2 reads on same gene fraction: 0.9546569238008248
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281912 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.351538 file1 and file2 reads on same gene fraction: 0.9542140662625591
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.28191 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.351506 file1 and file2 reads on same gene fraction: 0.9539815660549696
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281904 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.351704 file1 and file2 reads on same gene fraction: 0.9545462094162585 file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam file1 identical alignment to ref fraction: 0.984348 file2 identical alignment to ref fraction: 0.810988 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.180946 file1 and file2 reads on same chr fraction: 0.819054 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.819054 file1 and file2 reads on same gene fraction: 1.0
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907 file2 identical alignment to ref fraction: 0.282 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631 file1 and file2 reads on same chr fraction: 0.369 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.352 file1 and file2 reads on same gene fraction: 0.954 file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam file1 identical alignment to ref fraction: 0.984 file2 identical alignment to ref fraction: 0.811 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.181 file1 and file2 reads on same chr fraction: 0.819 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.819 file1 and file2 reads on same gene fraction: 1.0
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907 file2 identical alignment to ref fraction: 0.282 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631 file1 and file2 reads on same chr fraction: 0.369 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.35 file1 and file2 reads on same gene fraction: 0.954 file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam file1 identical alignment to ref fraction: 0.984 file2 identical alignment to ref fraction: 0.811 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.181 file1 and file2 reads on same chr fraction: 0.819 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.82 file1 and file2 reads on same gene fraction: 1.0
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907 file2 identical alignment to ref fraction: 0.282 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631 file1 and file2 reads on same chr fraction: 0.369 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.35 file1 and file2 reads on same gene fraction: 0.954 file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam file1 identical alignment to ref fraction: 0.984 file2 identical alignment to ref fraction: 0.811 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.181 file1 and file2 reads on same chr fraction: 0.819 file1 and file2 identical alignments fraction: 0.0 file1 and file2 overlapping align fraction: 0.82 file1 and file2 reads on same gene fraction: 1.0
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam
metric | fraction |
---|---|
file1 identical alignment to ref | 0.907 |
file2 identical alignment to ref | 0.282 |
file1 unaligned reads | 0.0 |
file2 unaligned reads | 0.631 |
file1 and file2 reads on same chr | 0.369 |
file1 and file2 identical alignments | 0.0 |
file1 and file2 overlapping align | 0.35 |
file1 and file2 reads on same gene | 0.956 |
file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam
metric | fraction |
---|---|
file1 identical alignment to ref | 0.984 |
file2 identical alignment to ref | 0.811 |
file1 unaligned reads | 0.0 |
file2 unaligned reads | 0.181 |
file1 and file2 reads on same chr | 0.819 |
file1 and file2 identical alignments | 0.0 |
file1 and file2 overlapping align | 0.82 |
file1 and file2 reads on same gene | 1.0 |
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam
metric | fraction |
---|---|
file1 identical alignment to ref | 0.907 |
file2 identical alignment to ref | 0.282 |
file1 unaligned reads | 0.0 |
file2 unaligned reads | 0.631 |
file1 and file2 reads on same chr | 0.369 |
file1 and file2 identical alignments | 0.0 |
file1 and file2 overlapping align | 0.35 |
file1 and file2 reads on same gene | 0.956 |
file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam
metric | fraction |
---|---|
file1 identical alignment to ref | 0.984 |
file2 identical alignment to ref | 0.811 |
file1 unaligned reads | 0.0 |
file2 unaligned reads | 0.181 |
file1 and file2 reads on same chr | 0.819 |
file1 and file2 identical alignments | 0.0 |
file1 and file2 overlapping align | 0.82 |
file1 and file2 reads on same gene | 1.0 |
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam
metric | fraction |
---|---|
file1 identical alignment to ref | 0.907 |
file2 identical alignment to ref | 0.282 |
file1 unaligned reads | 0.0 |
file2 unaligned reads | 0.631 |
file1 and file2 reads on same chr | 0.369 |
file1 and file2 identical alignments | 0.0 |
file1 and file2 overlapping align | 0.35 |
file1 and file2 reads on same gene | 0.956 |
file1: cellranger_pbmc10k_chrM_500k_reads.bam, file2: thermite_pbmc10k_chrM_500k_reads.bam
metric | fraction |
---|---|
file1 identical alignment to ref | 0.984 |
file2 identical alignment to ref | 0.811 |
file1 unaligned reads | 0.0 |
file2 unaligned reads | 0.181 |
file1 and file2 reads on same chr | 0.819 |
file1 and file2 identical alignments | 0.0 |
file1 and file2 overlapping align | 0.82 |
file1 and file2 reads on same gene | 1.0 |
file1: cellranger_pbmc10k_chr21_500k_reads.bam, file2: thermite_pbmc10k_chr21_500k_reads.bam file1 identical alignment to ref fraction: 0.907342 file2 identical alignment to ref fraction: 0.281908 file1 unaligned reads fraction: 0.0 file2 unaligned reads fraction: 0.631464 file1 and file2 reads on same chr fraction: 0.368536 file1 and file2 identical alignments fraction: 0.0