Best strategy for non-coding variants

10XGenomics / vartrix

Single-Cell Genotyping Tool

MIT License

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Best strategy for non-coding variants #57

Open RegnerM2015 opened 3 years ago

RegnerM2015 commented 3 years ago

Hi @pmarks

I want to genotype scATAC-seq cells and specifically focus on non-coding genetic variants. Do you recommend performing variant calling restricted to non-coding regions first? Or would I subset the Vartrix output (on all variants) to just non-coding variants after?

Thanks! @RegnerM2015