Vartrix error. v1.1.22.
Error: failed to open BCF/VCF from "genome1K.phase3.SNP_AF5e2.chr1toX.hg38.mod2.vcf"
the vcf file looks like the following:
CHROM POS ID REF ALT QUAL FILTER INFO
chr1 11008 rs575272151 C G 100 PASS AF=0.0880591
chr1 11012 rs544419019 C G 100 PASS AF=0.0880591
chr1 13116 rs62635286 T G 100 PASS AF=0.0970447
chr1 13118 rs200579949 A G 100 PASS AF=0.0970447
chr1 13273 rs531730856 G C 100 PASS AF=0.0950479
chr1 14464 rs546169444 A T 100 PASS AF=0.0958466
chr1 14599 rs531646671 T A 100 PASS AF=0.147564
chr1 14604 rs541940975 A G 100 PASS AF=0.147564
chr1 14930 rs75454623 A G 100 PASS AF=0.482228
chr1 15211 rs78601809 T G 100 PASS AF=0.609026
chr1 15274 rs62636497 A G,T 100 PASS AF=0.347244,0.640974
chr1 15820 rs2691315 G T 100 PASS AF=0.410543
chr1 18849 rs533090414 C G 100 PASS AF=0.951877
chr1 30923 rs806731 G T 100 PASS AF=0.872404
chr1 49298 rs200943160 T C 100 PASS AF=0.782149
chr1 49554 rs539322794 A G 100 PASS AF=0.063099
chr1 51479 rs116400033 T A 100 PASS AF=0.128195
chr1 52238 rs2691277 T G 100 PASS AF=0.921725
chr1 54490 rs141149254 G A 100 PASS AF=0.0960463
chr1 54716 rs569128616 C T 100 PASS AF=0.289137
chr1 55164 rs3091274 C A 100 PASS AF=0.923323
chr1 55545 rs28396308 C T 100 PASS AF=0.239217
chr1 58814 rs114420996 G A 100 PASS AF=0.109026
chr1 59040 rs62637815 T C 100 PASS AF=0.0615016
chr1 60351 rs62637817 A G 100 PASS AF=0.0549121
chr1 62777 rs528401309 A T 100 PASS AF=0.25639
chr1 63268 rs75478250 T C 100 PASS AF=0.353035
chr1 63671 rs80011619 G A 100 PASS AF=0.1875
keep getting the errors as:
Vartrix error. v1.1.22. Error: failed to open BCF/VCF from "genome1K.phase3.SNP_AF5e2.chr1toX.hg38.mod2.vcf"
the vcf file looks like the following:
CHROM POS ID REF ALT QUAL FILTER INFO
chr1 11008 rs575272151 C G 100 PASS AF=0.0880591 chr1 11012 rs544419019 C G 100 PASS AF=0.0880591 chr1 13116 rs62635286 T G 100 PASS AF=0.0970447 chr1 13118 rs200579949 A G 100 PASS AF=0.0970447 chr1 13273 rs531730856 G C 100 PASS AF=0.0950479 chr1 14464 rs546169444 A T 100 PASS AF=0.0958466 chr1 14599 rs531646671 T A 100 PASS AF=0.147564 chr1 14604 rs541940975 A G 100 PASS AF=0.147564 chr1 14930 rs75454623 A G 100 PASS AF=0.482228 chr1 15211 rs78601809 T G 100 PASS AF=0.609026 chr1 15274 rs62636497 A G,T 100 PASS AF=0.347244,0.640974 chr1 15820 rs2691315 G T 100 PASS AF=0.410543 chr1 18849 rs533090414 C G 100 PASS AF=0.951877 chr1 30923 rs806731 G T 100 PASS AF=0.872404 chr1 49298 rs200943160 T C 100 PASS AF=0.782149 chr1 49554 rs539322794 A G 100 PASS AF=0.063099 chr1 51479 rs116400033 T A 100 PASS AF=0.128195 chr1 52238 rs2691277 T G 100 PASS AF=0.921725 chr1 54490 rs141149254 G A 100 PASS AF=0.0960463 chr1 54716 rs569128616 C T 100 PASS AF=0.289137 chr1 55164 rs3091274 C A 100 PASS AF=0.923323 chr1 55545 rs28396308 C T 100 PASS AF=0.239217 chr1 58814 rs114420996 G A 100 PASS AF=0.109026 chr1 59040 rs62637815 T C 100 PASS AF=0.0615016 chr1 60351 rs62637817 A G 100 PASS AF=0.0549121 chr1 62777 rs528401309 A T 100 PASS AF=0.25639 chr1 63268 rs75478250 T C 100 PASS AF=0.353035 chr1 63671 rs80011619 G A 100 PASS AF=0.1875