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13308204545 / Chord

remove single cells Doublets by integrating tools!
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changed RNA assay data to counts #3

Closed quevedor2 closed 2 years ago

quevedor2 commented 2 years ago

the @assays$RNA@data can store the normalized and transformed counts if logNormalization or scaleData was run. To ensure that you use the raw counts for the scds package (which is required especially for scds::bcds computation), it should be @assays$RNA@counts