Identical chord score - Githubissues

chuckzzzz commented 11 months ago

Hi,

Thanks for developing the software. I have encountered some issue with chord outputting identical scores when the three ensemble methods output different scores. This only happens for some of my datasets. Do you know why this may be? Thanks!

13308204545 commented 11 months ago

Is there any error reported during the software operation？

------------------ 原始邮件 ------------------ 发件人: "13308204545/Chord" @.>; 发送时间: 2023年10月16日(星期一) 凌晨4:25 @.>; @.***>; 主题: [13308204545/Chord] Identical chord score (Issue #7)

Hi,

Thanks for developing the software. I have encountered some issue with chord outputting identical scores when the three ensemble methods output different scores. This only happens for some of my datasets. Do you know why this may be? Thanks!

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chuckzzzz commented 11 months ago

There aren't any errors that stops the doublet detection algorithm. However, I did receive this error occasionally. Do you have any idea why this may be?

Loading required package: gbm
Loaded gbm 2.1.8.1
XIO:  fatal IO error 0 (Success) on X server "172.20.4.31:16.0"
      after 709 requests (709 known processed) with 0 events remaining.

Thanks!

13308204545 commented 11 months ago

I really haven't encountered this situation without reporting an error. You can try to find these values from the result file "testreal_score.csv" and draw them manually. In some server environments, gbm packages may be incompatible, and I may not be able to advise you on that.

------------------ 原始邮件 ------------------ 发件人: @.>; 发送时间: 2023年10月18日(星期三) 凌晨4:51 收件人: @.>; 抄送: @.>; @.>; 主题: Re: [13308204545/Chord] Identical chord score (Issue #7)

There aren't any errors that stops the doublet detection algorithm. However, I did receive this error occasionally. Do you have any idea why this may be? Loading required package: gbm Loaded gbm 2.1.8.1 XIO: fatal IO error 0 (Success) on X server "172.20.4.31:16.0" after 709 requests (709 known processed) with 0 events remaining.
Thanks!

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chuckzzzz commented 11 months ago

Thanks for the quick response. Also is there any way to control what objects are being saved to the directory, such as seu.robj and sce.robj? I suspect it is also possible that this error might have something to do with I/O but I am not usre.

13308204545 commented 11 months ago

I didn't develop this feature... Files are generated in the run directory.

------------------ 原始邮件 ------------------ 发件人: @.>; 发送时间: 2023年10月22日(星期天) 中午1:06 收件人: @.>; 抄送: @.>; @.>; 主题: Re: [13308204545/Chord] Identical chord score (Issue #7)

Thanks for the quick response. Also is there any way to control what objects are being saved to the directory, such as seu.robj and sce.robj? I suspect it is also possible that this error might have something to do with I/O but I am not usre.

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13308204545 / Chord

Identical chord score #7