search

21cmfast / 21cmFAST

Official repository for 21cmFAST: a code for generating fast simulations of the cosmological 21cm signal
MIT License
58 stars 37 forks source link

[BUG] #274

Closed AgusTor92 closed 2 years ago

AgusTor92 commented 2 years ago

Hello, I'm new to using the package 21cmFAST with conda . I have problems with running a small code after installing 21cmFAST. i run the small code given in the description:

import py21cmfast as p21c coeval = p21c.run_coeval( redshift=8.0, user_params={'HII_DIM': 50, "USE_INTERPOLATION_TABLES": False} ) p21c.plotting.coeval_sliceplot(coeval, kind='brightness_temp')

Describe the bug: and I got the following message:

OSError: Found no user data directory for 21cmFAST! Should be at /Users/feynman/.21cmfast.Try re-installing 21cmFAST.

To Reproduce: Steps to reproduce the behavior:

  1. ...
  2. ...

Expected behavior:

Details:

Additional context I reinstall 21cmFAST again and again but I got the same message. Can you give me a hand? Thanks

steven-murray commented 2 years ago

Hi @AgusTor92 -- can you print out the result of conda list | grep 21cmFAST?

AgusTor92 commented 2 years ago

After typing conda list i got the following

21cmfast 3.1.1 py39hffa0f39_0 conda-forge appnope 0.1.2 py39hecd8cb5_1001
argon2-cffi 21.3.0 pyhd3eb1b0_0
argon2-cffi-bindings 21.2.0 py39hca72f7f_0
astropy 5.0 py39h7588534_0
attrs 21.4.0 pyhd3eb1b0_0
backcall 0.2.0 pyhd3eb1b0_0
basemap-data 1.3.2 pyhd3eb1b0_1
basemap-data-hires 1.3.2 pyhd3eb1b0_1
bidict 0.21.2 pyhd3eb1b0_0
bleach 4.1.0 pyhd3eb1b0_0
brotli 1.0.9 hb1e8313_2
c-ares 1.18.1 hca72f7f_0
ca-certificates 2022.2.1 hecd8cb5_0
cached-property 1.5.2 py_0
certifi 2021.10.8 py39hecd8cb5_2
cffi 1.15.0 py39hc55c11b_1
click 8.0.4 py39hecd8cb5_0
cycler 0.11.0 pyhd3eb1b0_0
debugpy 1.5.1 py39he9d5cce_0
decorator 5.1.1 pyhd3eb1b0_0
defusedxml 0.7.1 pyhd3eb1b0_0
descartes 1.1.0 pyhd3eb1b0_4
entrypoints 0.3 py39hecd8cb5_0
fast-histogram 0.9 py39he3068b8_0
fftw 3.3.10 nompi_hf082fe4_102 conda-forge fonttools 4.25.0 pyhd3eb1b0_0
freetype 2.11.0 hd8bbffd_0
giflib 5.2.1 haf1e3a3_0
gsl 2.6 h71c5fe9_2 conda-forge h5py 3.6.0 py39h4a1dd59_0
hdf5 1.10.6 nompi_hc5d9132_1114 conda-forge icu 58.2 h0a44026_3
importlib-metadata 4.8.2 py39hecd8cb5_0
importlib_metadata 4.8.2 hd3eb1b0_0
ipykernel 6.4.1 py39hecd8cb5_1
ipympl 0.8.7 pyhd3eb1b0_0
ipython 7.31.1 py39hecd8cb5_0
ipython_genutils 0.2.0 pyhd3eb1b0_1
ipywidgets 7.6.5 pyhd3eb1b0_1
jedi 0.18.1 py39hecd8cb5_1
jinja2 3.0.2 pyhd3eb1b0_0
jpeg 9d h9ed2024_0
jsonschema 3.2.0 pyhd3eb1b0_2
jupyter 1.0.0 py39hecd8cb5_7
jupyter_client 7.1.2 pyhd3eb1b0_0
jupyter_console 6.4.0 pyhd3eb1b0_0
jupyter_core 4.9.1 py39hecd8cb5_0
jupyterlab_pygments 0.1.2 py_0
jupyterlab_widgets 1.0.0 pyhd3eb1b0_1
kiwisolver 1.3.2 py39he9d5cce_0
krb5 1.19.2 hcd88c3b_0
lcms2 2.12 hf1fd2bf_0
libblas 3.9.0 1_h508aa58_netlib conda-forge libcblas 3.9.0 5_h0661a58_netlib conda-forge libcurl 7.80.0 h6dfd666_0
libcxx 12.0.0 h2f01273_0
libedit 3.1.20210910 hca72f7f_0
libev 4.33 h9ed2024_1
libffi 3.3 hb1e8313_2
libgfortran 5.0.0 9_3_0_h6c81a4c_23 conda-forge libgfortran5 9.3.0 h6c81a4c_23 conda-forge liblapack 3.9.0 5_h0661a58_netlib conda-forge libnghttp2 1.46.0 ha29bfda_0
libpng 1.6.37 ha441bb4_0
libsodium 1.0.18 h1de35cc_0
libssh2 1.9.0 ha12b0ac_1
libtiff 4.2.0 h87d7836_0
libwebp 1.2.2 h56c3ce4_0
libwebp-base 1.2.2 hca72f7f_0
llvm-openmp 12.0.0 h0dcd299_1
lz4-c 1.9.3 h23ab428_1
markupsafe 2.0.1 py39h9ed2024_0
matplotlib 3.5.1 py39h6e9494a_0 conda-forge matplotlib-base 3.5.1 py39hfb0c5b7_0
matplotlib-inline 0.1.2 pyhd3eb1b0_2
mistune 0.8.4 py39h9ed2024_1000
mpl-scatter-density 0.7 py_0
mpld3 0.5.7 pyhd3eb1b0_0
munkres 1.1.4 py_0
nbclient 0.5.11 pyhd3eb1b0_0
nbconvert 6.3.0 py39hecd8cb5_0
nbformat 5.1.3 pyhd3eb1b0_0
ncurses 6.3 hca72f7f_2
nest-asyncio 1.5.1 pyhd3eb1b0_0
nomkl 1.0 h5ca1d4c_0 conda-forge notebook 6.4.8 py39hecd8cb5_0
numpy 1.22.2 py39h9d9ce41_0 conda-forge olefile 0.46 pyhd3eb1b0_0
openssl 1.1.1m hca72f7f_0
packaging 21.3 pyhd3eb1b0_0
pandas 1.2.4 py39h23ab428_0
pandocfilters 1.5.0 pyhd3eb1b0_0
parso 0.8.3 pyhd3eb1b0_0
pexpect 4.8.0 pyhd3eb1b0_3
pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 8.4.0 py39h98e4679_0
pip 21.2.4 py39hecd8cb5_0
prometheus_client 0.13.1 pyhd3eb1b0_0
prompt-toolkit 3.0.20 pyhd3eb1b0_0
prompt_toolkit 3.0.20 hd3eb1b0_0
ptyprocess 0.7.0 pyhd3eb1b0_2
pycparser 2.21 pyhd3eb1b0_0
pyerfa 2.0.0 py39h9ed2024_0
pygments 2.11.2 pyhd3eb1b0_0
pyparsing 3.0.4 pyhd3eb1b0_0
pyqt 5.9.2 py39h23ab428_6
pyrsistent 0.18.0 py39hca72f7f_0
python 3.9.7 h88f2d9e_1
python-dateutil 2.8.2 pyhd3eb1b0_0
python_abi 3.9 2_cp39 conda-forge pytz 2021.3 pyhd3eb1b0_0
pyyaml 6.0 py39hca72f7f_1
pyzmq 22.3.0 py39he9d5cce_2
qt 5.9.7 h468cd18_1
qtconsole 5.2.2 pyhd3eb1b0_0
qtpy 1.11.2 pyhd3eb1b0_0
readline 8.1.2 hca72f7f_1
scipy 1.8.0 py39h056f1c0_1 conda-forge seaborn 0.11.0 py_0
send2trash 1.8.0 pyhd3eb1b0_1
setuptools 58.0.4 py39hecd8cb5_0
sip 4.19.13 py39h23ab428_0
six 1.16.0 pyhd3eb1b0_1
sqlite 3.37.2 h707629a_0
terminado 0.13.1 py39hecd8cb5_0
testpath 0.5.0 pyhd3eb1b0_0
tk 8.6.11 h7bc2e8c_0
tornado 6.1 py39h9ed2024_0
traitlets 5.1.1 pyhd3eb1b0_0
typing-extensions 3.10.0.2 hd3eb1b0_0
typing_extensions 3.10.0.2 pyh06a4308_0
tzdata 2021e hda174b7_0
wcwidth 0.2.5 pyhd3eb1b0_0
webencodings 0.5.1 py39hecd8cb5_1
wheel 0.37.1 pyhd3eb1b0_0
widgetsnbextension 3.5.2 py39hecd8cb5_0
xz 5.2.5 h1de35cc_0
yaml 0.2.5 haf1e3a3_0
zeromq 4.3.4 h23ab428_0
zipp 3.7.0 pyhd3eb1b0_0
zlib 1.2.11 h4dc903c_4
zstd 1.4.9 h322a384_0

AgusTor92 commented 2 years ago

However @steven-murray , I will try to fix this by using the recommendation given in #266

AgusTor92 commented 2 years ago

Okay, it's running the code and I got some warnings. But at the end, I got the message:

ERROR: Passing parameters norm and vmin/vmax simultaneously is not supported. Please pass vmin/vmax directly to the norm when creating it.

steven-murray commented 2 years ago

Hi @AgusTor92 -- I just now merged the PR that will deploy v3.1.4 to conda-forge. If you wait an ~hour or so you should be able to conda update 21cmFAST and ensure that it installs v3.1.4 and this matplotlib error should go away.

AgusTor92 commented 2 years ago

Great @steven-murray. Sorry for the inconveniences. I was following all the issues and discussions and I got stuck. I will update 21cmFAST and pray for a successful running.

AgusTor92 commented 2 years ago

Okay, it works! Thanks, @steven-murray -- I run some examples to get in touch with the code. In some examples, the kernel has died but it can be fixed.