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23andMe / seqseek

Easy access to human reference genome sequences
MIT License
56 stars 14 forks source link

Does this support sequences from databases other than UCSC? #12

Open programmingprincess opened 4 years ago

programmingprincess commented 4 years ago

For instance, are we able to provide a different fasta file?

mdshw5 commented 4 years ago

It looks like this project is really geared to the specific reference assemblies 23andMe uses. I was just taking a look at seqseek to see how similar it is to my project, which would definitely be appropriate for accessing sequences from a difference fasta file: https://github.com/mdshw5/pyfaidx.