1Algorithm
commented
9 months ago Hello, I also met the same problem, may I ask if you have solved it? Can you tell me what to do.thank you
Open tarekegn82 opened 1 year ago
1Algorithm
commented
9 months ago Hello, I also met the same problem, may I ask if you have solved it? Can you tell me what to do.thank you
tarekegn82
commented
9 months ago Hello, I saw similar issue on nnUNet repository and it seems not a big deal for reproducibility. I didn’t solve it though.
On Sat, Oct 21, 2023 at 11:28 AM 1Algorithm @.***> wrote:
Hello, I also met the same problem, may I ask if you have solved it? Can you tell me what to do.thank you
— Reply to this email directly, view it on GitHub https://github.com/282857341/nnFormer/issues/116#issuecomment-1773637476, or unsubscribe https://github.com/notifications/unsubscribe-auth/APZ6CFYMBQZ4LVQIQLLBPYDYAM6MZAVCNFSM6AAAAAAXK4YXQOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTONZTGYZTONBXGY . You are receiving this because you authored the thread.Message ID: @.***>
Dear Zhou,
Thank you for your contribution to this paper. As the title indicates I am having an issue with running the test on your model. Up until the following output the program seems to be working. Please let me know what should be fixed from my side. You can see my working directory below. Thank you
using the following model files: ['/home/lanbo/nnUnet1/DATASET/nnUNet_trained_models/nnFormer/3d_fullres/Task003_tumor/nnFormerTrainerV2_nnformer_tumor__nnFormerPlansv2.1/fold_0/model_best.model'] starting preprocessing generator starting prediction... inference done. Now waiting for the segmentation export to finish... WARNING! Cannot run postprocessing because the postprocessing file is missing. Make sure to run consolidate_folds in the output folder of the model first! The folder you need to run this in is /home/lanbo/nnUnet1/DATASET/nnUNet_trained_models/nnFormer/3d_fullres/Task003_tumor/nnFormerTrainerV2_nnformer_tumor__nnFormerPlansv2.1 loading success... /home/lanbo/anaconda3/envs/nnFormer/lib/python3.6/site-packages/numpy/core/fromnumeric.py:3373: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /home/lanbo/anaconda3/envs/nnFormer/lib/python3.6/site-packages/numpy/core/_methods.py:170: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount)