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2i2c-org / binderhub-service

https://2i2c.org/binderhub-service/
BSD 3-Clause "New" or "Revised" License
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Build error for executablebooks / jupyterlab-myst #58

Closed arnim closed 11 months ago

arnim commented 11 months ago

Context

Build error for executablebooks / jupyterlab-myst HEAD at 37a9126 Not sure where to report 


Both `require_build_only` traitlet, and the query parameter `build_only` are true, so the built image will not be launched
Waiting for build to start...
Picked Git content provider.
Cloning into '/tmp/repo2dockerep_1c8qw'...
HEAD is now at 37a9126 chore: run lint
Python version unspecified, using current default Python version 3.10. This will change in the future.Building conda environment for python=3.10
Using CondaBuildPack builder
Step 1/52 : FROM docker.io/library/buildpack-deps:bionic
 ---> 0f137f206fa8
Step 2/52 : ENV DEBIAN_FRONTEND=noninteractive
 ---> Using cache
 ---> ff6f7ed72c7c
Step 3/52 : RUN apt-get -qq update &&     apt-get -qq install --yes --no-install-recommends locales > /dev/null &&     apt-get -qq purge &&     apt-get -qq clean &&     rm -rf /var/lib/apt/lists/*
 ---> Using cache
 ---> 971f513f7ca0
Step 4/52 : RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen &&     locale-gen
 ---> Using cache
 ---> c8eb65cb4d7b
Step 5/52 : ENV LC_ALL=en_US.UTF-8     LANG=en_US.UTF-8     LANGUAGE=en_US.UTF-8
 ---> Using cache
 ---> eb4275746a05
Step 6/52 : ENV SHELL=/bin/bash
 ---> Using cache
 ---> 785b5700f000
Step 7/52 : ARG NB_USER
 ---> Using cache
 ---> c01e835c3653
Step 8/52 : ARG NB_UID
 ---> Using cache
 ---> dd84e20d956b
Step 9/52 : ENV USER=${NB_USER}     HOME=/home/${NB_USER}
 ---> Using cache
 ---> e1a67f6e0231
Step 10/52 : RUN groupadd         --gid ${NB_UID}         ${NB_USER} &&     useradd         --comment "Default user"         --create-home         --gid ${NB_UID}         --no-log-init         --shell /bin/bash         --uid ${NB_UID}         ${NB_USER}
 ---> Using cache
 ---> d5cc9db20d60
Step 11/52 : RUN apt-get -qq update &&     apt-get -qq install --yes --no-install-recommends        gettext-base        less        unzip        > /dev/null &&     apt-get -qq purge &&     apt-get -qq clean &&     rm -rf /var/lib/apt/lists/*
 ---> Using cache
 ---> 8fe524fa6f37
Step 12/52 : EXPOSE 8888
 ---> Using cache
 ---> 1ddf54aebc82
Step 13/52 : ENV APP_BASE=/srv
 ---> Using cache
 ---> 75b49678b1e2
Step 14/52 : ENV CONDA_DIR=${APP_BASE}/conda
 ---> Using cache
 ---> 61792f70c19c
Step 15/52 : ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/notebook
 ---> Using cache
 ---> a3dbf74477f8
Step 16/52 : ENV NPM_DIR=${APP_BASE}/npm
 ---> Using cache
 ---> 84596f33d8fe
Step 17/52 : ENV NPM_CONFIG_GLOBALCONFIG=${NPM_DIR}/npmrc
 ---> Using cache
 ---> 0c4732a6fc42
Step 18/52 : ENV NB_ENVIRONMENT_FILE=/tmp/env/environment.lock
 ---> Using cache
 ---> fccb55891404
Step 19/52 : ENV MAMBA_ROOT_PREFIX=${CONDA_DIR}
 ---> Using cache
 ---> 94bdee7d9cf6
Step 20/52 : ENV MAMBA_EXE=${CONDA_DIR}/bin/mamba
 ---> Using cache
 ---> 7d8a1025cb15
Step 21/52 : ENV CONDA_PLATFORM=linux-64
 ---> Using cache
 ---> 6892c1e14663
Step 22/52 : ENV KERNEL_PYTHON_PREFIX=${NB_PYTHON_PREFIX}
 ---> Using cache
 ---> 31824a6307c3
Step 23/52 : ENV PATH=${NB_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${NPM_DIR}/bin:${PATH}
 ---> Using cache
 ---> c3e49fd1ca38
Step 24/52 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2factivate-2dconda-2esh-44e764 /etc/profile.d/activate-conda.sh
 ---> Using cache
 ---> 9c3d8ca85c5c
Step 25/52 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e10-2dlinux-2d64-2elock-388e0b /tmp/env/environment.lock
 ---> Using cache
 ---> 134fe5df6faa
Step 26/52 : COPY --chown=1000:1000 build_script_files/-2fusr-2flib-2fpython3-2e10-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2finstall-2dbase-2denv-2ebash-e5509f /tmp/install-base-env.bash
 ---> Using cache
 ---> a0516e2ace4c
Step 27/52 : RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-base-env.bash' && rm -rf /tmp/install-base-env.bash /tmp/env
 ---> Using cache
 ---> 59d0ba66e7b6
Step 28/52 : RUN mkdir -p ${NPM_DIR} && chown -R ${NB_USER}:${NB_USER} ${NPM_DIR}
 ---> Using cache
 ---> a0ce6b22094a
Step 29/52 : USER root
 ---> Using cache
 ---> 778c03041334
Step 30/52 : ARG REPO_DIR=${HOME}
 ---> Using cache
 ---> aa69b1462d27
Step 31/52 : ENV REPO_DIR=${REPO_DIR}
 ---> Using cache
 ---> 0b5ad7083ddd
Step 32/52 : RUN if [ ! -d "${REPO_DIR}" ]; then         /usr/bin/install -o ${NB_USER} -g ${NB_USER} -d "${REPO_DIR}";     fi
 ---> Using cache
 ---> bd75d86b4bd2
Step 33/52 : WORKDIR ${REPO_DIR}
 ---> Using cache
 ---> 94ac7eeb0c49
Step 34/52 : RUN chown ${NB_USER}:${NB_USER} ${REPO_DIR}
 ---> Using cache
 ---> f277af75b587
Step 35/52 : ENV PATH=${HOME}/.local/bin:${REPO_DIR}/.local/bin:${PATH}
 ---> Using cache
 ---> e597acb89114
Step 36/52 : ENV CONDA_DEFAULT_ENV=${KERNEL_PYTHON_PREFIX}
 ---> Using cache
 ---> f0b2f6001cab
Step 37/52 : COPY --chown=1000:1000 src/binder/environment.yml ${REPO_DIR}/binder/environment.yml
 ---> c2b695fb17fc
Step 38/52 : USER ${NB_USER}
 ---> Running in 002865e906f4
Removing intermediate container 002865e906f4
 ---> 6d8df03ef820
Step 39/52 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '
 ---> Running in 83325fb8fb07

Looking for: ["python[version='>=3.8,<3.9.0a0']", "jupyterlab[version='>=3,<4.0.0a0']", "nodejs[version='>=14,<15']", 'pip', 'wheel', 'numpy', 'matplotlib', 'ipywidgets', 'sympy']

Transaction

  Prefix: /srv/conda/envs/notebook

  Updating specs:

   - numpy
   - matplotlib
   - sympy
   - python[version='>=3.8,<3.9.0a0']
   - jupyterlab[version='>=3,<4.0.0a0']
   - nodejs[version='>=14,<15']
   - pip
   - wheel
   - ipywidgets

  Package                               Version  Build                Channel          Size
─────────────────────────────────────────────────────────────────────────────────────────────
  Install:
─────────────────────────────────────────────────────────────────────────────────────────────

  + libgfortran5                         13.2.0  ha4646dd_0           conda-forge       1MB
  + gmp                                   6.2.1  h58526e2_0           conda-forge     826kB
  + alsa-lib                              1.2.8  h166bdaf_0           conda-forge     592kB
  + gettext                              0.21.1  h27087fc_0           conda-forge       4MB
  + libiconv                               1.17  h166bdaf_0           conda-forge       1MB
  + pcre2                                 10.40  hc3806b6_0           conda-forge       2MB
  + libtool                               2.4.7  h27087fc_0           conda-forge     412kB
  + zstd                                  1.5.5  hfc55251_0           conda-forge     545kB
  + keyutils                              1.6.1  h166bdaf_0           conda-forge     118kB
  + libpng                               1.6.39  h753d276_0           conda-forge     283kB
  + nspr                                   4.35  h27087fc_0           conda-forge     227kB
  + gstreamer-orc                        0.4.34  hd590300_0           conda-forge     259kB
  + libudev1                                253  h0b41bf4_0           conda-forge     119kB
  + mpg123                               1.31.3  hcb278e6_0           conda-forge     485kB
  + xkeyboard-config                       2.38  h0b41bf4_0           conda-forge     882kB
  + lame                                  3.100  h166bdaf_1003        conda-forge     508kB
  + libogg                                1.3.4  h7f98852_1           conda-forge     211kB
  + libopus                               1.3.1  h7f98852_1           conda-forge     261kB
  + xorg-libxau                          1.0.11  hd590300_0           conda-forge      14kB
  + lz4-c                                 1.9.4  hcb278e6_0           conda-forge     143kB
  + attr                                  2.5.1  h166bdaf_1           conda-forge      71kB
  + libexpat                              2.5.0  hcb278e6_1           conda-forge      78kB
  + pixman                               0.40.0  h36c2ea0_0           conda-forge     643kB
  + xorg-libice                           1.1.1  hd590300_0           conda-forge      58kB
  + xorg-xextproto                        7.3.0  h0b41bf4_1003        conda-forge      30kB
  + jpeg                                     9e  h0b41bf4_3           conda-forge     240kB
  + libwebp-base                          1.3.2  hd590300_0           conda-forge     402kB
  + lerc                                  4.0.0  h27087fc_0           conda-forge     282kB
  + libdeflate                             1.17  h0b41bf4_0           conda-forge      65kB
  + graphite2                            1.3.13  h58526e2_1001        conda-forge     105kB
  + xorg-renderproto                     0.11.1  h7f98852_1002        conda-forge      10kB
  + pthread-stubs                           0.4  h36c2ea0_1001        conda-forge       6kB
  + xorg-libxdmcp                         1.1.3  h7f98852_0           conda-forge      19kB
  + xorg-kbproto                          1.0.7  h7f98852_1002        conda-forge      27kB
  + xorg-xproto                          7.0.31  h7f98852_1007        conda-forge      75kB
  + libedit                        3.1.20191231  he28a2e2_2           conda-forge     124kB
  + libdb                                6.2.32  h9c3ff4c_0           conda-forge      24MB
  + libevent                             2.1.10  h9b69904_4           conda-forge       1MB
  + mysql-common                         8.0.32  h14678bc_0           conda-forge     803kB
  + libgfortran-ng                       13.2.0  h69a702a_0           conda-forge      23kB
  + mpfr                                  4.2.0  hb012696_0           conda-forge     631kB
  + libgpg-error                           1.47  h71f35ed_0           conda-forge     261kB
  + libxml2                              2.10.3  hca2bb57_4           conda-forge     714kB
  + libglib                              2.78.0  hebfc3b9_0           conda-forge       3MB
  + freetype                             2.12.1  h267a509_2           conda-forge     635kB
  + nss                                    3.92  h1d7d5a4_0           conda-forge       2MB
  + libvorbis                             1.3.7  h9c3ff4c_0           conda-forge     286kB
  + libflac                               1.4.3  h59595ed_0           conda-forge     394kB
  + libcap                                 2.66  ha37c62d_0           conda-forge     100kB
  + expat                                 2.5.0  hcb278e6_1           conda-forge     137kB
  + xorg-libsm                            1.2.4  h7391055_0           conda-forge      27kB
  + libtiff                               4.5.0  h6adf6a1_2           conda-forge     407kB
  + libxcb                                 1.13  h7f98852_1004        conda-forge     400kB
  + krb5                                 1.20.1  hf9c8cef_0           conda-forge       1MB
  + jack                                 1.9.22  h11f4161_0           conda-forge     464kB
  + mysql-libs                           8.0.32  h54cf53e_0           conda-forge       2MB
  + fftw                                 3.3.10  nompi_hc118613_108   conda-forge       2MB
  + libopenblas                          0.3.24  pthreads_h413a1c8_0  conda-forge       5MB
  + mpc                                   1.3.1  hfe3b2da_0           conda-forge     116kB
  + libgcrypt                            1.10.1  h166bdaf_0           conda-forge     720kB
  + libllvm15                            15.0.7  hadd5161_1           conda-forge      33MB
  + glib-tools                           2.78.0  hfc55251_0           conda-forge     112kB
  + libsndfile                            1.2.2  hbc2eb40_0           conda-forge     355kB
  + fontconfig                           2.14.2  h14ed4e7_0           conda-forge     272kB
  + dbus                                 1.13.6  h5008d03_3           conda-forge     619kB
  + openjpeg                              2.5.0  hfec8fc6_2           conda-forge     352kB
  + lcms2                                  2.15  hfd0df8a_0           conda-forge     241kB
  + xcb-util-wm                           0.4.1  h516909a_0           conda-forge      56kB
  + xcb-util-keysyms                      0.4.0  h516909a_0           conda-forge      12kB
  + xcb-util                              0.4.0  h516909a_0           conda-forge      20kB
  + xorg-libx11                           1.8.4  h0b41bf4_0           conda-forge     830kB
  + libxkbcommon                          1.5.0  h79f4944_1           conda-forge     563kB
  + xcb-util-renderutil                   0.3.9  h166bdaf_0           conda-forge      16kB
  + libpq                                  15.1  h2baec63_3           conda-forge       2MB
  + libcups                               2.3.3  h36d4200_3           conda-forge       5MB
  + libblas                               3.9.0  18_linux64_openblas  conda-forge      15kB
  + libsystemd0                             252  h2a991cd_0           conda-forge     393kB
  + libclang13                           15.0.7  default_h9986a30_3   conda-forge      10MB
  + xcb-util-image                        0.4.0  h166bdaf_0           conda-forge      24kB
  + xorg-libxext                          1.3.4  h0b41bf4_2           conda-forge      50kB
  + xorg-libxrender                      0.9.10  h7f98852_1003        conda-forge      33kB
  + libcblas                              3.9.0  18_linux64_openblas  conda-forge      14kB
  + liblapack                             3.9.0  18_linux64_openblas  conda-forge      14kB
  + pulseaudio                             16.1  h4ab2085_1           conda-forge       2MB
  + libclang                             15.0.7  default_h7634d5b_3   conda-forge     133kB
  + font-ttf-dejavu-sans-mono              2.37  hab24e00_0           conda-forge     397kB
  + font-ttf-inconsolata                  3.000  h77eed37_0           conda-forge      97kB
  + font-ttf-source-code-pro              2.038  h77eed37_0           conda-forge     701kB
  + font-ttf-ubuntu                        0.83  hab24e00_0           conda-forge       2MB
  + fonts-conda-forge                         1  0                    conda-forge       4kB
  + ply                                    3.11  py_1                 conda-forge      45kB
  + munkres                               1.1.4  pyh9f0ad1d_0         conda-forge      12kB
  + pyparsing                             3.0.9  pyhd8ed1ab_0         conda-forge      81kB
  + cycler                               0.11.0  pyhd8ed1ab_0         conda-forge      10kB
  + toml                                 0.10.2  pyhd8ed1ab_0         conda-forge      18kB
  + mpmath                                1.3.0  pyhd8ed1ab_0         conda-forge     438kB
  + fonts-conda-ecosystem                     1  0                    conda-forge       4kB
  + importlib-resources                  5.12.0  pyhd8ed1ab_0         conda-forge       9kB
  + unicodedata2                         15.0.0  py38h0a891b7_0       conda-forge     509kB
  + pillow                                9.4.0  py38hde6dc18_1       conda-forge      46MB
  + kiwisolver                            1.4.5  py38h7f3f72f_0       conda-forge      73kB
  + glib                                 2.78.0  hfc55251_0           conda-forge     491kB
  + gmpy2                                 2.1.2  py38h793c122_1       conda-forge     228kB
  + numpy                                1.24.4  py38h59b608b_0       conda-forge       7MB
  + sip                                  6.7.11  py38h17151c0_0       conda-forge     486kB
  + cairo                                1.16.0  ha61ee94_1014        conda-forge       2MB
  + fonttools                            4.42.1  py38h01eb140_0       conda-forge       2MB
  + gstreamer                            1.21.3  h25f0c4b_1           conda-forge       2MB
  + contourpy                             1.1.1  py38h7f3f72f_0       conda-forge     222kB
  + pyqt5-sip                           12.11.0  py38h8dc9893_3       conda-forge      85kB
  + harfbuzz                              6.0.0  h8e241bc_0           conda-forge       1MB
  + gst-plugins-base                     1.21.3  h4243ec0_1           conda-forge       3MB
  + matplotlib-base                       3.7.2  py38hf5b0b65_0       conda-forge       7MB
  + qt-main                              5.15.6  h18908ee_6           conda-forge      55MB
  + pyqt                                 5.15.7  py38ha0d8c90_3       conda-forge       5MB
  + matplotlib                            3.7.2  py38h578d9bd_0       conda-forge       8kB
  + sympy                                  1.12  pypyh9d50eac_103     conda-forge       4MB

  Change:
─────────────────────────────────────────────────────────────────────────────────────────────

  - pycparser                              2.21  pyhd8ed1ab_0         conda-forge          
  + pycparser                              2.21  pyhd8ed1ab_0         conda-forge     103kB
  - ruamel.yaml.clib                      0.2.7  py310h1fa729e_1      conda-forge          
  + ruamel.yaml.clib                      0.2.7  py38h1de0b5d_1       conda-forge     146kB
  - pyrsistent                           0.19.3  py310h1fa729e_0      conda-forge          
  + pyrsistent                           0.19.3  py38h1de0b5d_0       conda-forge      99kB
  - psutil                                5.9.5  py310h1fa729e_0      conda-forge          
  + psutil                                5.9.5  py38h1de0b5d_0       conda-forge     357kB
  - markupsafe                            2.1.3  py310h2372a71_0      conda-forge          
  + markupsafe                            2.1.3  py38h01eb140_0       conda-forge      24kB
  - y-py                                  0.5.9  py310h4426083_0      conda-forge          
  + y-py                                  0.5.9  py38h9fda977_0       conda-forge       1MB
  - greenlet                              2.0.2  py310hc6cd4ac_1      conda-forge          
  + greenlet                              2.0.2  py38h17151c0_1       conda-forge     190kB
  - cffi                                 1.15.1  py310h255011f_3      conda-forge          
  + cffi                                 1.15.1  py38h4a40e3a_3       conda-forge     235kB
  - jupyter_core                          5.3.0  py310hff52083_0      conda-forge          
  + jupyter_core                          5.3.0  py38h578d9bd_0       conda-forge      91kB
  - argon2-cffi-bindings                 21.2.0  py310h5764c6d_3      conda-forge          
  + argon2-cffi-bindings                 21.2.0  py38h0a891b7_3       conda-forge      36kB
  - jupyter_server                       1.23.6  pyhd8ed1ab_0         conda-forge          
  + jupyter_server                       1.23.6  pyhd8ed1ab_0         conda-forge     244kB

  Reinstall:
─────────────────────────────────────────────────────────────────────────────────────────────

  o setuptools                           67.7.2  pyhd8ed1ab_0         conda-forge          
  o zipp                                 3.15.0  pyhd8ed1ab_0         conda-forge          
  o websocket-client                      1.5.2  pyhd8ed1ab_0         conda-forge          
  o webencodings                          0.5.1  py_1                 conda-forge          
  o typing_extensions                     4.6.3  pyha770c72_0         conda-forge          
  o traitlets                             5.9.0  pyhd8ed1ab_0         conda-forge          
  o tomli                                 2.0.1  pyhd8ed1ab_0         conda-forge          
  o soupsieve                       2.3.2.post1  pyhd8ed1ab_0         conda-forge          
  o sniffio                               1.3.0  pyhd8ed1ab_0         conda-forge          
  o six                                  1.16.0  pyh6c4a22f_0         conda-forge          
  o send2trash                            1.8.2  pyh41d4057_0         conda-forge          
  o rfc3986-validator                     0.1.1  pyh9f0ad1d_0         conda-forge          
  o pytz                                 2023.3  pyhd8ed1ab_0         conda-forge          
  o python-json-logger                    2.0.7  pyhd8ed1ab_0         conda-forge          
  o python-fastjsonschema                2.17.1  pyhd8ed1ab_0         conda-forge          
  o pysocks                               1.7.1  pyha2e5f31_6         conda-forge          
  o pyjwt                                 2.7.0  pyhd8ed1ab_0         conda-forge          
  o pygments                             2.15.1  pyhd8ed1ab_0         conda-forge          
  o pure_eval                             0.2.2  pyhd8ed1ab_0         conda-forge          
  o ptyprocess                            0.7.0  pyhd3deb0d_0         conda-forge          
  o prometheus_client                    0.17.0  pyhd8ed1ab_0         conda-forge          
  o pkgutil-resolve-name                 1.3.10  pyhd8ed1ab_0         conda-forge          
  o pickleshare                           0.7.5  py_1003              conda-forge          
  o parso                                 0.8.3  pyhd8ed1ab_0         conda-forge          
  o pandocfilters                         1.5.0  pyhd8ed1ab_0         conda-forge          
  o pamela                                1.0.0  py_0                 conda-forge          
  o packaging                              23.1  pyhd8ed1ab_0         conda-forge          
  o nest-asyncio                          1.5.6  pyhd8ed1ab_0         conda-forge          
  o mistune                               2.0.5  pyhd8ed1ab_0         conda-forge          
  o json5                                 0.9.5  pyh9f0ad1d_0         conda-forge          
  o ipython_genutils                      0.2.0  py_1                 conda-forge          
  o idna                                    3.4  pyhd8ed1ab_0         conda-forge          
  o flit-core                             3.9.0  pyhd8ed1ab_0         conda-forge          
  o executing                             1.2.0  pyhd8ed1ab_0         conda-forge          
  o exceptiongroup                        1.1.1  pyhd8ed1ab_0         conda-forge          
  o entrypoints                             0.4  pyhd8ed1ab_0         conda-forge          
  o defusedxml                            0.7.1  pyhd8ed1ab_0         conda-forge          
  o decorator                             5.1.1  pyhd8ed1ab_0         conda-forge          
  o charset-normalizer                    3.1.0  pyhd8ed1ab_0         conda-forge          
  o certifi                            2023.5.7  pyhd8ed1ab_0         conda-forge          
  o blinker                               1.6.2  pyhd8ed1ab_0         conda-forge          
  o backports                               1.0  pyhd8ed1ab_3         conda-forge          
  o backcall                              0.2.0  pyh9f0ad1d_0         conda-forge          
  o attrs                                23.1.0  pyh71513ae_1         conda-forge          
  o async_generator                        1.10  py_0                 conda-forge          
  o aiofiles                             22.1.0  pyhd8ed1ab_0         conda-forge          
  o importlib_resources                  5.12.0  pyhd8ed1ab_0         conda-forge          
  o importlib-metadata                    6.6.0  pyha770c72_0         conda-forge          
  o tinycss2                              1.2.1  pyhd8ed1ab_0         conda-forge          
  o typing-extensions                     4.6.3  hd8ed1ab_0           conda-forge          
  o matplotlib-inline                     0.1.6  pyhd8ed1ab_0         conda-forge          
  o comm                                  0.1.3  pyhd8ed1ab_0         conda-forge          
  o beautifulsoup4                       4.12.2  pyha770c72_0         conda-forge          
  o rfc3339-validator                     0.1.4  pyhd8ed1ab_0         conda-forge          
  o python-dateutil                       2.8.2  pyhd8ed1ab_0         conda-forge          
  o asttokens                             2.2.1  pyhd8ed1ab_0         conda-forge          
  o babel                                2.12.1  pyhd8ed1ab_1         conda-forge          
  o urllib3                               2.0.3  pyhd8ed1ab_0         conda-forge          
  o jupyterlab_pygments                   0.2.2  pyhd8ed1ab_0         conda-forge          
  o pexpect                               4.8.0  pyh1a96a4e_2         conda-forge          
  o jedi                                 0.18.2  pyhd8ed1ab_0         conda-forge          
  o bleach                                6.0.0  pyhd8ed1ab_0         conda-forge          
  o anyio                                 3.7.0  pyhd8ed1ab_1         conda-forge          
  o backports.functools_lru_cache         1.6.4  pyhd8ed1ab_0         conda-forge          
  o platformdirs                          3.5.1  pyhd8ed1ab_0         conda-forge          
  o aiosqlite                            0.19.0  pyhd8ed1ab_0         conda-forge          
  o stack_data                            0.6.2  pyhd8ed1ab_0         conda-forge          
  o requests                             2.31.0  pyhd8ed1ab_0         conda-forge          
  o wcwidth                               0.2.6  pyhd8ed1ab_0         conda-forge          
  o prompt-toolkit                       3.0.38  pyha770c72_0         conda-forge          
  o terminado                            0.17.1  pyh41d4057_0         conda-forge          
  o jsonschema                           4.17.3  pyhd8ed1ab_0         conda-forge          
  o mako                                  1.2.4  pyhd8ed1ab_0         conda-forge          
  o jinja2                                3.1.2  pyhd8ed1ab_1         conda-forge          
  o ypy-websocket                         0.8.2  pyhd8ed1ab_0         conda-forge          
  o jupyter_ydoc                          0.2.4  pyhd8ed1ab_0         conda-forge          
  o jupyter_client                        8.2.0  pyhd8ed1ab_0         conda-forge          
  o pyopenssl                            23.2.0  pyhd8ed1ab_1         conda-forge          
  o oauthlib                              3.2.2  pyhd8ed1ab_0         conda-forge          
  o argon2-cffi                          21.3.0  pyhd8ed1ab_0         conda-forge          
  o nbformat                              5.9.0  pyhd8ed1ab_0         conda-forge          
  o jupyter_telemetry                     0.1.0  pyhd8ed1ab_1         conda-forge          
  o jupyter_events                        0.6.3  pyhd8ed1ab_0         conda-forge          
  o alembic                              1.11.1  pyhd8ed1ab_0         conda-forge          
  o ipykernel                            6.23.1  pyh210e3f2_0         conda-forge          
  o certipy                               0.1.3  py_0                 conda-forge          
  o nbclient                              0.8.0  pyhd8ed1ab_0         conda-forge          
  o jupyterhub-base                       3.1.1  pyh2a2186d_0         conda-forge          
  o nbconvert-core                        7.4.0  pyhd8ed1ab_0         conda-forge          
  o nbconvert-pandoc                      7.4.0  pyhd8ed1ab_0         conda-forge          
  o nbconvert                             7.4.0  pyhd8ed1ab_0         conda-forge          
  o notebook-shim                         0.2.3  pyhd8ed1ab_0         conda-forge          
  o jupyterlab_server                    2.22.1  pyhd8ed1ab_0         conda-forge          
  o jupyter_server_fileid                 0.9.0  pyhd8ed1ab_0         conda-forge          
  o jupyter-resource-usage                0.7.1  pyhd8ed1ab_0         conda-forge          
  o nbclassic                             1.0.0  pyhb4ecaf3_1         conda-forge          
  o jupyter_server_ydoc                   0.8.0  pyhd8ed1ab_0         conda-forge          
  o notebook                              6.5.4  pyha770c72_0         conda-forge          
  o jupyter-offlinenotebook               0.2.2  pyh1d7be83_0         conda-forge          
  o jupyterhub-singleuser                 3.1.1  pyh2a2186d_0         conda-forge          

  Upgrade:
─────────────────────────────────────────────────────────────────────────────────────────────

  - wheel                                0.40.0  pyhd8ed1ab_0         conda-forge          
  + wheel                                0.41.2  pyhd8ed1ab_0         conda-forge      57kB
  - pip                                  23.1.2  pyhd8ed1ab_0         conda-forge          
  + pip                                  23.2.1  pyhd8ed1ab_0         conda-forge       1MB
  - widgetsnbextension                    4.0.7  pyhd8ed1ab_0         conda-forge          
  + widgetsnbextension                    4.0.9  pyhd8ed1ab_0         conda-forge     886kB
  - jupyterlab_widgets                    3.0.7  pyhd8ed1ab_1         conda-forge          
  + jupyterlab_widgets                    3.0.9  pyhd8ed1ab_0         conda-forge     187kB
  - tornado                               6.3.2  py310h2372a71_0      conda-forge          
  + tornado                               6.3.3  py38h01eb140_0       conda-forge     630kB
  - pyzmq                                25.1.0  py310h5bbb5d0_0      conda-forge          
  + pyzmq                                25.1.1  py38h509eb50_0       conda-forge     457kB
  - pyyaml                                  6.0  py310h5764c6d_5      conda-forge          
  + pyyaml                                6.0.1  py38h01eb140_0       conda-forge     182kB
  - debugpy                               1.6.7  py310heca2aa9_0      conda-forge          
  + debugpy                               1.8.0  py38h17151c0_0       conda-forge       2MB
  - ruamel.yaml                         0.17.31  py310h2372a71_0      conda-forge          
  + ruamel.yaml                         0.17.32  py38h01eb140_0       conda-forge     200kB
  - sqlalchemy                           2.0.15  py310h2372a71_0      conda-forge          
  + sqlalchemy                           2.0.20  py38h01eb140_0       conda-forge       3MB
  - ipywidgets                            8.0.6  pyhd8ed1ab_0         conda-forge          
  + ipywidgets                            8.1.1  pyhd8ed1ab_0         conda-forge     114kB
  - jupyterlab                            3.6.4  pyhd8ed1ab_0         conda-forge          
  + jupyterlab                            3.6.5  pyhd8ed1ab_0         conda-forge       5MB

  Downgrade:
─────────────────────────────────────────────────────────────────────────────────────────────

  - icu                                    72.1  hcb278e6_0           conda-forge          
  + icu                                    70.1  h27087fc_0           conda-forge      14MB
  - openssl                               3.1.1  hd590300_1           conda-forge          
  + openssl                              1.1.1w  hd590300_0           conda-forge       2MB
  - python_abi                             3.10  3_cp310              conda-forge          
  + python_abi                              3.8  3_cp38               conda-forge       6kB
  - nodejs                              18.15.0  h4abf6b9_1           conda-forge          
  + nodejs                              14.20.1  h96d913c_1           conda-forge      16MB
  - python                              3.10.11  he550d4f_0_cpython   conda-forge          
  + python                               3.8.15  h257c98d_0_cpython   conda-forge      21MB
  - ipython                              8.14.0  pyh41d4057_0         conda-forge          
  + ipython                              8.12.2  pyh41d4057_0         conda-forge     582kB
  - cryptography                         41.0.1  py310h75e40e8_0      conda-forge          
  + cryptography                         39.0.0  py38h1724139_0       conda-forge       1MB

  Summary:

  Install: 117 packages
  Change: 11 packages
  Reinstall: 100 packages
  Upgrade: 12 packages
  Downgrade: 7 packages

  Total download: 332MB

─────────────────────────────────────────────────────────────────────────────────────────────

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/srv/conda/lib/python3.11/site-packages/conda/exception_handler.py", line 16, in __call__
        return func(*args, **kwargs)
               ^^^^^^^^^^^^^^^^^^^^^
      File "/srv/conda/lib/python3.11/site-packages/conda_env/cli/main.py", line 49, in do_call
        exit_code = getattr(module, func_name)(args, parser)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/srv/conda/lib/python3.11/site-packages/conda/notices/core.py", line 123, in wrapper
        return func(*args, **kwargs)
               ^^^^^^^^^^^^^^^^^^^^^
      File "/srv/conda/lib/python3.11/site-packages/conda_env/cli/main_update.py", line 139, in execute
        result[installer_type] = installer.install(prefix, specs, args, env)
                                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/srv/conda/lib/python3.11/site-packages/mamba/mamba_env.py", line 153, in mamba_install
        transaction.fetch_extract_packages()
    RuntimeError: Could not set URL (code: 14 - url = /setuptools-67.7.2-pyhd8ed1ab_0.conda)

`$ /srv/conda/bin/mamba update -p /srv/conda/envs/notebook --file binder/environment.yml`

  environment variables:
                 CIO_TEST=<not set>
  CONDA_AUTO_UPDATE_CONDA=false
        CONDA_DEFAULT_ENV=/srv/conda/envs/notebook
                CONDA_DIR=/srv/conda
           CONDA_PLATFORM=linux-64
               CONDA_ROOT=/srv/conda
           CURL_CA_BUNDLE=<not set>
               LD_PRELOAD=<not set>
                     PATH=/home/jovyan/.local/bin:/home/jovyan/.local/bin:/srv/conda/envs/notebo
                          ok/bin:/srv/conda/bin:/srv/npm/bin:/usr/local/sbin:/usr/local/bin:/usr
                          /sbin:/usr/bin:/sbin:/bin
       REQUESTS_CA_BUNDLE=<not set>
            SSL_CERT_FILE=<not set>

     active environment : None
       user config file : /home/jovyan/.condarc
 populated config files : /srv/conda/.condarc
          conda version : 23.5.2
    conda-build version : not installed
         python version : 3.11.5.final.0
       virtual packages : __archspec=1=x86_64
                          __glibc=2.27=0
                          __linux=5.15.89=0
                          __unix=0=0
       base environment : /srv/conda  (writable)
      conda av data dir : /srv/conda/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /srv/conda/pkgs
                          /home/jovyan/.conda/pkgs
       envs directories : /srv/conda/envs
                          /home/jovyan/.conda/envs
               platform : linux-64
             user-agent : conda/23.5.2 requests/2.31.0 CPython/3.11.5 Linux/5.15.89+ ubuntu/18.04.6 glibc/2.27
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

time: 47.799
Removing intermediate container 83325fb8fb07
The command '/bin/sh -c TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "binder/environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '' returned a non-zero code: 1

CC @yuvipanda

Proposal

No response

Updates and actions

No response

arnim commented 11 months ago

same with mybinder https://mybinder.org/v2/gh/executablebooks/jupyterlab-myst/main?urlpath=lab

arnim commented 11 months ago

fyi @rowanc1

rowanc1 commented 11 months ago

The quickstart examples do work, which shows how to use jupyterlab-myst.

See: https://github.com/executablebooks/jupyterlab-myst-quickstart/blob/main/requirements.in

Binder: https://mybinder.org/v2/gh/executablebooks/jupyterlab-myst-quickstart/main?urlpath=lab

To use jupyterlab-myst on <4, you can use v1.2.0.