Automatically Close Resources

pixeebot[bot] commented 2 months ago

Description

In this pull request, the code is being updated to use the with statement for file handling instead of directly opening and closing files. This approach provides better exception handling and ensures that files are properly closed when no longer needed.

Here are the changes made in the code:

Replaced direct file opening with the with statement for file handling in the read_VDJ_palindrome_parameters method in the load_model.py file.
Replaced direct file opening with the with statement for file handling in the read_igor_VJ_palindrome_parameters method in the load_model.py file.
Replaced direct file opening with the with statement for file handling in the load_genomic_CDR3_anchor_pos_and_functionality function in the code snippet.

These changes ensure that file resources are managed efficiently and improve the overall code readability and maintainability.

Description by Korbit AI

What change is being made?

Refactor the code to use context managers (with statements) for file handling to ensure resources are automatically closed after use.

Why are these changes being made?

This change improves resource management by ensuring that files are properly closed after their contents are processed, which prevents potential resource leaks and enhances code reliability and readability. Using context managers is a best practice in Python for handling file operations safely and efficiently.

performance-testing-bot[bot] commented 2 months ago

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cr-gpt[bot] commented 2 months ago

Seems you are using me but didn't get OPENAI_API_KEY seted in Variables/Secrets for this repo. you could follow readme for more information

code-companion-ai[bot] commented 2 months ago

Processing PR updates...

korbit-ai[bot] commented 2 months ago

My review is in progress :book: - I will have feedback for you in a few minutes!

pep8speaks commented 2 months ago

Hello @pixeebot[bot]! Thanks for opening this PR. We checked the lines you've touched for PEP 8 issues, and found:

In the file olga/load_model.py:

Line 341:1: W293 blank line contains whitespace Line 342:1: W293 blank line contains whitespace Line 343:13: E303 too many blank lines (2) Line 347:1: W293 blank line contains whitespace Line 348:1: W293 blank line contains whitespace Line 349:13: E303 too many blank lines (2) Line 370:80: E501 line too long (90 > 79 characters) Line 373:80: E501 line too long (98 > 79 characters) Line 375:80: E501 line too long (99 > 79 characters) Line 377:80: E501 line too long (99 > 79 characters) Line 379:80: E501 line too long (98 > 79 characters) Line 385:1: W293 blank line contains whitespace Line 386:1: W293 blank line contains whitespace Line 474:1: W293 blank line contains whitespace Line 475:1: W293 blank line contains whitespace Line 476:13: E303 too many blank lines (2) Line 478:1: W293 blank line contains whitespace Line 479:1: W293 blank line contains whitespace Line 480:13: E303 too many blank lines (2) Line 490:80: E501 line too long (98 > 79 characters) Line 492:80: E501 line too long (98 > 79 characters) Line 496:1: W293 blank line contains whitespace Line 517:1: W293 blank line contains whitespace Line 523:1: W293 blank line contains whitespace Line 526:80: E501 line too long (113 > 79 characters)

code-companion-ai[bot] commented 2 months ago

Description has been updated!

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Commits
Files that changed from the base of the PR and between 4e0bc36ec40acc2ad93b2878e348512e71955a01 and 45756d9b3277c084f9c0da49f6e61c6b44c07bf4.

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git-greetings[bot] commented 2 months ago

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git-greetings[bot] commented 2 months ago

First PR by @pixeebot[bot]

PR Details of @pixeebot[bot] in statbiophys-OLGA :	OPEN	CLOSED	TOTAL
1	0	1

2lambda123 / statbiophys-OLGA