a count stat that could report the number of bases mapped in each region of the supplied bed file with -r
a sum stat (or other name) that reports the total number bases mapped in -r regions. So here the output would be a single number.
An application would be for instance to quickly compute on/off target % for a WES/target experiment.
I do agree that I can post-process the output of d4tools view with R/awk/bedtools but I was thinking that it could be great to have that in the core stat options.
Hi,
sorry about the multiple issues :-)
I was thinking that it could be useful to have :
count
stat that could report the number of bases mapped in each region of the supplied bed file with-r
sum
stat (or other name) that reports the total number bases mapped in-r
regions. So here the output would be a single number.An application would be for instance to quickly compute on/off target % for a WES/target experiment.
I do agree that I can post-process the output of
d4tools view
with R/awk/bedtools but I was thinking that it could be great to have that in the core stat options.This looks minor though.
Anthony